Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1 174 2e-38 seq866 122 1e-22 >seq1 Length=228573443 Score = 174 bits (192), Expect = 2e-38 Identities = 173/224 (77%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| ||||||||||| || || || ||||| || |||||||| || Sbjct 165348242 GTCTGGAACAACTGCTCATCACCCCATTCAGGATGCTCCTGTTTAAGCACATCGCATACT 165348301 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || ||||| |||||||| | ||| ||||| | |||||| Sbjct 165348302 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 165348361 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 | || | |||||| ||||| || |||| || || |||| || | || | ||| | Sbjct 165348362 AACTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 165348421 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| || |||||||| ||||| |||||||| || || ||||| Sbjct 165348422 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 165348465 Score = 172 bits (190), Expect = 8e-38 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||||||| || || ||||| |||||||| | || || || | ||| Sbjct 165346238 AAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 165346297 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || |||||||| || || || || || || Sbjct 165346298 TGAAAACCCACTTCTCCACCAAAAGTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACA 165346357 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || | || | ||| ||||||| ||| Sbjct 165346358 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATGGTCTCACCAAAG 165346417 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | || || || ||||| || | | | ||| || || || ||||| |||| | Sbjct 165346418 ATGGCATCTGGCCGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCACAGCATCGATG 165346477 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||||||| ||||||||||| |||| || ||||| || ||| Sbjct 165346478 TCACCATAGAGTGCTTCCAACTCTGCAGACATTTCCTTTTCTCCT 165346522 Score = 113 bits (124), Expect = 7e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||||| || || | ||||| ||||||||| ||| || ||||| || | ||| ||| Sbjct 165350005 TCACCTTTGACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTAGTA 165350064 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || || ||||||||||| ||||||||||| || ||||| Sbjct 165350065 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAAGTT 165350124 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 165350125 GGTGGACTGTCAATCAAATGTGATCTGGCT 165350154 Score = 107 bits (118), Expect = 3e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| || | |||||||| || |||||| ||| ||| | || Sbjct 165349392 TCTTACCCCATGGCCCAGCCCGTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 165349451 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| ||| | |||||||||||| Sbjct 165349452 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGAGCCCTGGGGATC 165349511 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300 ||||| || | || | | || | ||| |||||||||| ||||||| || || | Sbjct 165349512 AGGGATGAACTTTCTTCTTAGAAGTAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 165349571 Query 10301 CGCCTTACCTGA 10312 | |||||||| Sbjct 165349572 CTTTTTACCTGA 165349583 Score = 104 bits (114), Expect = 3e-17 Identities = 109/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || || |||| |||| || || ||||| |||||||||||| ||| | Sbjct 165351066 CTTACGTGTTGAGCAGTTTTCTCCATAGAATCCTGTCCGGGTACAATCGCACTTATACTG 165351125 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||||| || || || ||||| ||||||||||| || Sbjct 165351126 GTCAAATCCCACACTCATACATACACCTCGGTTTTGACATGGGTGGGAACAGCAAGGATT 165351185 Query 10960 GGCTGCAATTTAAAAGATAGAA 10981 ||||||| ||||| || |||| Sbjct 165351186 TGCTGCAA-TTAAAGGACAGAA 165351206 >seq866 Length=116767853 Score = 122 bits (134), Expect = 1e-22 Identities = 178/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || ||||||| || || || || ||||| || ||||| || ||||||||| Sbjct 100454581 GTGGCCGTCTTGACGATGTTAAAGCCCACCTCGCCGCCAAATGTGCTCGGCTTCCAGTAC 100454522 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| || || | |||||| |||||||| | ||| Sbjct 100454521 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCT 100454462 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTA 9111 || || ||||| || ||||| | ||| | ||||| | || | || || | ||| Sbjct 100454461 ATCATACTCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAA-GAAGCAGTCCGGGGTA 100454403 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || || | ||| ||||| | | |||||||| || || ||||||||||| Sbjct 100454402 GAACTCCAACGCATCAATGTCTCCATACAATTCCTCCAACTCTGCTGCCATCTCCTTCTC 100454343 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 100454342 TCCTACAAG 100454334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723325887676600