Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq301 91.5 1e-13 >seq301 Length=175400573 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | |||||| || || ||| | ||||||| | ||| || | | |||| Sbjct 31604998 CCTCATGCTGTACATGGCATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTG 31605057 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||| |||||| ||||||||||| ||||| || | | | || Sbjct 31605058 CCCACTTCTGGAAGGTTCTATCTCCTGCTGGTCTGGTCTCCACAAGCTCGGTGTCCTGAG 31605117 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | || ||||| || | || || |||||||| ||||||||| || Sbjct 31605118 TTTGGTCCTCGCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCAAGGG 31605177 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 31605178 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 31605207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397531731516744