Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq208 84.2 3e-11 >seq208 Length=194502333 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGT 154931 || ||||||||||||||||| || |||| || |||||| ||||| || | | ||| Sbjct 73989859 ATCATGATTACATACCCATCCACCAATGGGGTGTTTGAAGAGAACATCAGTGACGTGTGT 73989800 Query 154932 AAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAG 154991 | || | ||| | |||| || |||| || || || | |||||| | || || ||| Sbjct 73989799 GACCTCATCCATCAACATGGAGGATAGGTCTACCTAGACAGGGCAAATATGAACGCTCAG 73989740 Query 154992 GTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAA 155051 || ||| | || | || | ||| | ||||| | || ||||| | || || Sbjct 73989739 GTGGGAATCTGTCGCCCTGGAGACTTTGGGTCTGATGTCTCGCACCTAAATCTTCACAAG 73989680 Query 155052 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105 || ||||| ||||| || |||| || ||||||||| | || || || || ||| Sbjct 73989679 ACCTTCTGCATTCCCCACAGAGGAGGTGGTCCTGGCATGGGGCCCATTGGAGTA 73989626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578890982128160