Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq208 91.5 2e-13 >seq208 Length=194502333 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGT 159606 || ||||||||||| ||||| || |||| || |||||| |||||||| | | ||| Sbjct 73989859 ATCATGATTACATACCCATCCACCAATGGGGTGTTTGAAGAGAACATCAGTGACGTGTGT 73989800 Query 159607 AAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAG 159666 | | | ||| | |||| || |||| || || || | |||||| | || || ||| Sbjct 73989799 GACCTCATCCATCAACATGGAGGATAGGTCTACCTAGACAGGGCAAATATGAACGCTCAG 73989740 Query 159667 GTAGG--TCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATA 159724 || || ||| | || | |||| ||| | ||||| | || ||||| | || | Sbjct 73989739 GTGGGAATCTGTC--GCCCTGGAGACTTTGGGTCTGATGTCTCGCACCTAAATCTTCACA 73989682 Query 159725 AGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTA 159780 |||| ||||| ||||| || |||| || ||||||||| | || || ||||| ||| Sbjct 73989681 AGACCTTCTGCATTCCCCACAGAGGAGGTGGTCCTGGCATGGGGCCCATTGGAGTA 73989626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587724471402640