Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1588 365 5e-96 seq1481 365 5e-96 seq106 120 3e-22 seq793 107 2e-18 seq1024 102 9e-17 >seq1588 Length=553333 Score = 365 bits (404), Expect = 5e-96 Identities = 652/940 (69%), Gaps = 20/940 (2%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||| || | |||||||||||||| || || || || |||||||| Sbjct 230605 TTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTT--TTGGACTTGACACCACTCCCATC 230548 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | |||| | |||||||| ||||| |||| | ||| ||| Sbjct 230547 CTCTGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTC 230493 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||| |||| |||||||| | | ||| | | || | || || | ||| | | Sbjct 230492 TCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATA 230433 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || ||||| | ||| ||| ||||| | | |||||||| || || | Sbjct 230432 AGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGC 230373 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAAT 18908 || ||||| | || || || || |||||||||||||| | || || | ||||| | || Sbjct 230372 TTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT-TGATAATTAT 230314 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | ||| | || || || || || || ||||| |||||||| || ||||| Sbjct 230313 TTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAA 230254 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||| |||| ||||| ||||| || || | |||||| ||||| || | |||||||| Sbjct 230253 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCAT 230194 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | |||||| ||| || | ||||||||| || ||||| || ||||||||||| || ||||| Sbjct 230193 CGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 230134 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 |||||| || || || || | | ||| ||||| |||| || || | |||||| Sbjct 230133 TACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCA 230074 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || |||||||| |||||||| || ||||| ||||| || || || | ||| | ||| | Sbjct 230073 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGA--AGAGA 230017 Query 19209 CATACGCTCATCT---GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 || | || ||| | |||||| | || | || || | | ||| |||||||| || Sbjct 230016 AATTC-CTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 229958 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||| || ||||| || || || || || || || ||||| | |||||||| ||||| || Sbjct 229957 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 229898 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 | | ||||| || |||||||||||||| ||||| |||||||| |||||||| || Sbjct 229897 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 229838 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAA 19444 | | ||||| ||||||| | | || || | | || | ||| ||| | || Sbjct 229837 AACCAGAACATGGGATATAAAATATCTCTCCTC-GGGCTTCGGGGATTCCCAGTGCCGAA 229779 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 | || || || | || || || || ||||| || |||||||| || || ||||||| Sbjct 229778 TGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACA 229719 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | | ||| |||||| | || | | || || || ||||| Sbjct 229718 TCTGCCAGATATCATGGTACTCGACGGGGAAGATGACAAA 229679 >seq1481 Length=155549662 Score = 365 bits (404), Expect = 5e-96 Identities = 652/940 (69%), Gaps = 20/940 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||| || | |||||||||||||| || || || || |||||||| Sbjct 44508328 TTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTT--TTGGACTTGACACCACTCCCATC 44508385 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | |||| | |||||||| ||||| |||| | ||| ||| Sbjct 44508386 CTCTGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTC 44508440 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||| |||| |||||||| | | ||| | | || | || || | ||| | | Sbjct 44508441 TCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATA 44508500 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || ||||| | ||| ||| ||||| | | |||||||| || || | Sbjct 44508501 AGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGC 44508560 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAAT 18908 || ||||| | || || || || |||||||||||||| | || || | ||||| | || Sbjct 44508561 TTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT-TGATAATTAT 44508619 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | ||| | || || || || || || ||||| |||||||| || ||||| Sbjct 44508620 TTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAA 44508679 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||| |||| ||||| ||||| || || | |||||| ||||| || | |||||||| Sbjct 44508680 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCAT 44508739 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | |||||| ||| || | ||||||||| || ||||| || ||||||||||| || ||||| Sbjct 44508740 CGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 44508799 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 |||||| || || || || | | ||| ||||| |||| || || | |||||| Sbjct 44508800 TACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCA 44508859 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || |||||||| |||||||| || ||||| ||||| || || || | ||| | ||| | Sbjct 44508860 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGA--AGAGA 44508916 Query 19209 CATACGCTCATCT---GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 || | || ||| | |||||| | || | || || | | ||| |||||||| || Sbjct 44508917 AATTC-CTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44508975 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||| || ||||| || || || || || || || ||||| | |||||||| ||||| || Sbjct 44508976 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44509035 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 | | ||||| || |||||||||||||| ||||| |||||||| |||||||| || Sbjct 44509036 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44509095 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAA 19444 | | ||||| ||||||| | | || || | | || | ||| ||| | || Sbjct 44509096 AACCAGAACATGGGATATAAAATATCTCTCCTC-GGGCTTCGGGGATTCCCAGTGCCGAA 44509154 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 | || || || | || || || || ||||| || |||||||| || || ||||||| Sbjct 44509155 TGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACA 44509214 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | | ||| |||||| | || | | || || || ||||| Sbjct 44509215 TCTGCCAGATATCATGGTACTCGACGGGGAAGATGACAAA 44509254 Score = 190 bits (210), Expect = 2e-43 Identities = 385/566 (68%), Gaps = 9/566 (2%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| | ||| |||| ||||| || || || || | |||||| |||||||| | Sbjct 144080947 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144080888 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 ||||||||||||||| ||| || | ||||||||| | ||||| || ||||||||||| Sbjct 144080887 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144080828 Query 19081 ATACCTTCTACTGCTGCAAAAGC----AACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 | | ||| || ||||| || | | | |||||||| || | || || || Sbjct 144080827 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 144080768 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 |||||| || ||||| | |||||||| || ||||| ||||| || || || | Sbjct 144080767 CCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATGGC 144080709 Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 | | || ||| | | || | |||||||| ||||| || || | | | | | Sbjct 144080708 ACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATT 144080651 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 ||||| ||||| || ||||||||||| || || || || || || || | |||||| Sbjct 144080650 TATTTCAGAATGCATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGT 144080591 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 ||| | ||||| | |||| ||| ||||| ||||||| | ||| ||||||| || Sbjct 144080590 AATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGC 144080531 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CC 19435 |||||| || || | | ||| ||||||| | ||| || | | || | | || || Sbjct 144080530 TGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAG-GCTTCAGGGCTTCCC 144080472 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | | ||| || || || | || || || | | |||| |||||| ||||| ||| Sbjct 144080471 AGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTT 144080412 Query 19496 TTTTATACATGTTCCATATATCACGA 19521 | || ||||| ||||| |||||| || Sbjct 144080411 TCTTTTACATTTTCCAAATATCATGA 144080386 >seq106 Length=111504155 Score = 120 bits (132), Expect = 3e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||||||||||||||| | |||||||||||||||| ||| | Sbjct 10258844 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10258785 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 10258784 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 10258725 Query 19103 CAAC 19106 | || Sbjct 10258724 CTAC 10258721 Score = 105 bits (116), Expect = 8e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 10261009 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCT--GTTGGACTTGACATCACTCCCATC 10260952 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 10260951 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTC 10260892 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| |||||||| || | ||| Sbjct 10260891 TCCATAAAGTCAAATGGGTTCTCTAC 10260866 >seq793 Length=147911612 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | || ||||| || ||||| || ||| Sbjct 104140658 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 104140717 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| | |||||||| || ||||| || Sbjct 104140718 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGGCC 104140777 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 104140778 ACCACTCTTTCCCC 104140791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| |||||||| ||||| || || |||| Sbjct 104130026 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 104130085 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 104130086 ATAAAATCAAAAGGATTTT 104130104 >seq1024 Length=135753878 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | ||| || || | Sbjct 4049638 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 4049579 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| || |||||||| || |||||||| ||||||||||| | | || | Sbjct 4049578 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 4049519 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || |||||||||| ||| || | ||| || || Sbjct 4049518 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGG 4049470 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || || || ||||| || || Sbjct 4046793 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 4046734 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || |||||||| || ||||||||||| | |||| | ||| || Sbjct 4046733 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 4046674 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 4046673 TTTCTTATACCATA 4046660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561796485324360