Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq1 125 1e-23 >seq1 Length=228573443 Score = 125 bits (138), Expect = 1e-23 Identities = 195/277 (70%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 197371 GGATCCGTGGGAGGTTTCGCCAGTTTTCCGCTAAATATCTCAAACGCGACAGATATTGAG 197430 |||||| ||| |||| || | | | || ||||| |||||| | ||||| |||||| Sbjct 138943872 GGATCCTAGGG-GGTTCCGTGACTCTCCCCCTAAACATCTCAGTAGACACAGAGATTGAG 138943930 Query 197431 AACGTGGCTTGGAACGGCCCTAAAATCGCTTTAGCATTTGCCAATCCTAAAG---ACGTT 197487 ||||| |||| || || |||| ||| | || || || ||| |||| | || Sbjct 138943931 AACGTCATCTGGATTGGTCCCAAAAATGCTCTTGCTTTCGCACGTCCCAAAGAAAATGTA 138943990 Query 197488 ACCATAATGGATAAAAGCTACCAGGGTCGTGTCAACATTAGCCAAACCAACTACTCTTTG 197547 ||||| |||| |||||||||| ||| || | |||| | | | | ||||| || Sbjct 138943991 ACCATTATGGTCAAAAGCTACCTGGGCCGACTAGACATCACCAAGTGGAGTTACTCCCTG 138944050 Query 197548 TGCATTAGGAACCTGACCGTGAATGATGCTGGTTCGTATAAGGCCCAAATTAACAAAAAT 197607 ||||| || || ||||| |||||||||| || || || || ||||| || ||| ||| Sbjct 138944051 TGCATCAGCAATCTGACTCTGAATGATGCAGGATCCTACAAAGCCCAGATAAACCAAAGG 138944110 Query 197608 AATTCCCAAGTCACCACCAAGGAGGAATTTACTCTGT 197644 |||| |||||||||| |||||||||| || |||| Sbjct 138944111 AATTTTGAAGTCACCACTGAGGAGGAATTCACCCTGT 138944147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701798655125360