Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq1 244 1e-59 seq301 104 3e-17 seq302 93.3 5e-14 seq1056 84.2 3e-11 >seq1 Length=228573443 Score = 244 bits (270), Expect = 1e-59 Identities = 248/323 (77%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| || || ||| | || |||||||| ||||| Sbjct 138640361 GTTTCACAAAGCAGCTCAACCCCATTGATGGTCAACGGGATTCTGGGGGAGTCAGTAACT 138640302 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| ||||| | || |||||| |||| |||||||| |||| | ||| | Sbjct 138640301 CTTCCCCTGGAGTTTCCTGGAGGAGAGAAGGTCAACTCCATCACTTGGCTTTTCAATGAA 138640242 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || | ||||| || | ||| || |||| || || | |||||| | || ||| Sbjct 138640241 ACATCTCTTGCCTTCATAGTACCCCATGAAACCAAAAGTCCAGAAATCCACGTGACTAAT 138640182 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 ||||||| ||| |||||||| |||||||| |||||||||||||| ||||| |||||||| Sbjct 138640181 CCGAAACAGGGAAAGCGACTGAACTTCACCCAGTCCTACTCCCTGCAACTCAGCAACCTG 138640122 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 ||||||||||||| || || ||||| |||| ||| ||| | |||||| | || || | Sbjct 138640121 AAGATGGAAGACACAGGCTCTTACAGAGCCCAGATATCCACAGAGACCTCTGTAAAGCTG 138640062 Query 2178 TCCAGCTACACGCTGAGGATCTT 2200 ||||| ||||| |||||||| || Sbjct 138640061 TCCAGTTACACTCTGAGGATATT 138640039 Score = 219 bits (242), Expect = 5e-52 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 2206 AACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGA 2265 |||||| |||||| || || | |||||||||||| || | ||||||| ||| ||| ||| Sbjct 138635360 AACTGAGGAACATACAAGTTACCAATCACAGTCAGCTATTTCAGAATAGGACCTGTGAGC 138635301 Query 2266 TCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCT 2325 |||||||||| || ||||| |||||| | ||||||| |||| |||| ||||||||||| Sbjct 138635300 TCCATCTGACTTGCTCTGTGGAGGATGCAGATGACAATGTCTCATTCAGATGGGAGGCCT 138635241 Query 2326 TGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385 |||| || || ||| | | |||| |||||||| ||||||||||||||||| || Sbjct 138635240 TGGGAAACACACTTTCAAGTCAGCCAAACCTCACTGTCTCCTGGGACCCCAGGATTTCCA 138635181 Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445 |||| ||| ||||||| ||||| || || || ||||| || ||| | || ||| | |||| Sbjct 138635180 GTGAACAGGACTACACCTGCATAGCAGAGAATGCTGTCAGTAATTTATCCTTCTCTGTCT 138635121 Query 2446 CGGCCCAGAAGCTGTG 2461 | ||||||||||| || Sbjct 138635120 CTGCCCAGAAGCTTTG 138635105 Score = 215 bits (238), Expect = 6e-51 Identities = 242/324 (75%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| | ||||||||| || |||||||| ||||| Sbjct 140553572 GTTTCACAAAGCAGCTCAACCCCATTGATGGGGAATGGGGTTCTGGGGGAGTCAGTAACT 140553631 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| ||||| || || |||| |||| ||| |||||| |||| | ||| || Sbjct 140553632 CTTCCCCTGGAGTTTCCTGCAGGAGAGAGGATCCAGTTCATCACTTGGCTTTGCAATGGA 140553691 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || | ||||| | | |||| || | ||| || || | ||| || | || || Sbjct 140553692 ACATCTTTTGCCTTCCTAGAACCCTATGAAGGCAAAAGTCCAAAAATCTACGTGACTCAT 140553751 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 |||||| | |||||||| | |||||| ||||||||||||| || || |||||||| Sbjct 140553752 CCGAAATGGCAAAAGCGACTGAGCTTCACCCAGTCCTACTCCCCGCAGCTCAGCAACCTG 140553811 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 ||||||||| |||| || | |||||||||| ||| || | |||||| | | || | Sbjct 140553812 GAGATGGAAAACACAGGCTTTTACAGTGCCCAGATAGCCACAGAGACCTCTGCAAAGCTG 140553871 Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201 ||||| ||||| |||||||| ||| Sbjct 140553872 TCCAGTTACACTCTGAGGATATTC 140553895 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 2661 CACCTCAGACCAAAACATGCTAAACATAACACACCAGCA----GACTGACTCTTTGATAA 2716 ||| |||| ||||||||||||||| |||||||||||||| |||| ||||||||||| Sbjct 138630453 CACTTCAGGCCAAAACATGCTAAAGATAACACACCAGCACATTGACTCTCTCTTTGATAA 138630394 Query 2717 ATAAGCTAATGGAATTATGGTTGAC 2741 ||||| |||||||||||||||||| Sbjct 138630393 CTAAGCAAATGGAATTATGGTTGAC 138630369 >seq301 Length=175400573 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || || || || || | ||||||||||| ||||||||||||||| || || | |||| Sbjct 31518726 CCCTCGTGCTGCACATGGCATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCT 31518785 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || |||||||| ||||| | || || | |||| || || ||| Sbjct 31518786 GCCCACTTCTGGAAGGTTCCATCTCCTGCTGGCCTGGTCTCCACAAGCTCGGTGTCCTGA 31518845 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 |||| || || || || || | ||| || | | | || || || || || || |||| Sbjct 31518846 GTTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 31518905 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 31518906 GCCCAGCACC 31518915 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||||||||||||||| || || | |||| Sbjct 31604997 CCCTCATGCTGTACATGGCATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCT 31605056 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || | |||||| ||||| | || || | |||| || || ||| Sbjct 31605057 GCCCACTTCTGGAAGGTTCTATCTCCTGCTGGTCTGGTCTCCACAAGCTCGGTGTCCTGA 31605116 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 |||| || || || || || | ||| || | | | || || || || || || || | Sbjct 31605117 GTTTGGTCCTCGCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCAAGG 31605176 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 31605177 GCCCAGCACC 31605186 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 14520 GCAGCTTCCCACTTCCTTTTTGTTATTTGTGCGGCCATATCTGTCGCAGTCCAAGACCGT 14579 || || |||||||| | || || || || || ||||| || | ||| ||||| || | Sbjct 30103940 GCCGCCTCCCACTTGCGCTTGGTGATCTGAGCTGCCATGTCCGCCGCGGTCCAGGAGCTC 30103881 Query 14580 AGATCTTCATTTAGACTGAAATAATCTTTACCGTCGTAAGCGTACTGCTCATAACCACGA 14639 || || || || ||| || ||||| || |||||||| |||| ||| ||||| || || Sbjct 30103880 AGGTCCTCGTTCAGAGCGATGTAATCCTTGCCGTCGTAGGCGTGCTGTTCATACCCGCGG 30103821 Query 14640 ATGAAACTTCCATTTTCCCAGACATCACAGCCATACATTCGCTGAATCGTGTGAGA 14695 | ||| | || | || || || ||||||||||| ||| || |||||||| Sbjct 30103820 AGGAAGCGCCCGTCGGGCCCCACGTCGCAGCCATACATCACCTGCATGGTGTGAGA 30103765 Score = 82.4 bits (90), Expect = 1e-10 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 14170 CGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGA 14229 |||||| || ||||| || || | || |||||||| ||| ||||||||||| || | Sbjct 30682200 CGGGTAGCCCCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCA 30682141 Query 14230 CGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTG 14289 | | |||| |||| || || || || ||||| || || || | || || | |||| | Sbjct 30682140 CCACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCCACAAGCTCCG 30682081 Query 14290 TATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAA 14349 | || || | || | ||||| || | | ||| || | | | || || || || || | Sbjct 30682080 TGTCCTGGGTATGGCCCTCTCCATCCTGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGA 30682021 Query 14350 AACCCAAAGCCCAGCACC 14367 | |||| |||||||||| Sbjct 30682020 AGCCCAGGGCCCAGCACC 30682003 >seq302 Length=154107 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 14520 GCAGCTTCCCACTTCCTTTTTGTTATTTGTGCGGCCATATCTGTCGCAGTCCAAGACCGT 14579 || || |||||||| | || || || | || ||||| || | ||| ||||| || || Sbjct 98639 GCCGCCTCCCACTTGCGCTTGGTGATCCGAGCCGCCATGTCCGCCGCGGTCCAGGAGCGC 98698 Query 14580 AGATCTTCATTTAGACTGAAATAATCTTTACCGTCGTAAGCGTACTGCTCATAACCACGA 14639 || || || ||||| || ||||| || |||||||| ||||||||| || || ||| Sbjct 98699 AGGTCCTCGTTTAGGGCGATGTAATCCTTGCCGTCGTAGGCGTACTGCCGGTACCCGCGA 98758 Query 14640 ATGAAACTTCCATTTTCCCAGACATCACAGCCATACATTCGCTGAATCGTGTGAGA 14695 | ||| | ||| | || || || |||||||||||| ||| || |||||||| Sbjct 98759 AGGAAGCGTCCGTCGGGCCCCACGTCGCAGCCATACATTAACTGGATGGTGTGAGA 98814 >seq1056 Length=137163284 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 186279 AATTTTCTTAAAAGATATAAAGGCCCATCGGAACACTGGGTCGGTCTTCGAAGACAATCC 186338 ||||| || |||||||| |||||||| || || || ||| | || || ||||| |||| Sbjct 10081887 AATTTCCTGAAAAGATAAAAAGGCCCTTCTGACCATTGGATTGGCCTAAGAAGAGAATCA 10081946 Query 186339 TCTAACCACACTTGGAAATGGATAGACGAGACGGAGCATAATAACA 186384 || | |||| ||||||||||| |||| | | ||| ||||||||| Sbjct 10081947 TCCCATCACATTTGGAAATGGACAGACAACATGGAATATAATAACA 10081992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628933562388040