Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1588 260 2e-64 seq1481 260 2e-64 seq1 147 3e-30 seq106 111 2e-19 seq793 107 2e-18 >seq1588 Length=553333 Score = 260 bits (288), Expect = 2e-64 Identities = 520/762 (68%), Gaps = 14/762 (2%) Strand=Plus/Minus Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGT 36935 |||||||| | ||||| || || |||| || || || || || ||||||| ||| Sbjct 230556 ACTCCCATCCTCTGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTC-----AGT 230502 Query 36936 GATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACATGATA 36993 || ||||| ||| |||| |||||||| | | || | | | | ||| | | Sbjct 230501 GAAATATTCTCCGTAAAGTCAAATGGGCTC--TCTACTCCGAAAACCTTGCTAAAACCCA 230444 Query 36994 ATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTA 37053 |||| || ||| || || || ||||| || ||||||| |||||| | || | Sbjct 230443 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCA 230384 Query 37054 TACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCAT 37113 | ||||| || || || || | || || || ||| || |||||| ||||||| Sbjct 230383 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT 230324 Query 37114 CTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAAT 37172 ||| ||| | | || | || || | | ||| | | | | ||| |||| Sbjct 230323 TGATAATTATTTCTCTCACTTTCTCCTCC-GATGGTTTGTGTACCAGGTGTTTGAACATC 230265 Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||||||||| |||||||| |||||||| || || | |||||| ||||| || Sbjct 230264 AAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 230205 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 | || ||||| |||| ||| || | ||| ||||| | ||||||||| ||||||||| Sbjct 230204 AGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 230145 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || || ||||| ||||| || || ||||||| |||| ||| | || | | || Sbjct 230144 AAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCC 230085 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 |||||| | |||||||||||| || ||||| || ||| |||| || Sbjct 230084 CCAATCCAGCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCA 230026 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || |||||||| | ||||||| |||| | || ||||| ||||| || | ||||||| Sbjct 230025 TTGAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATAC 229966 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 |||||||| || || ||||| || || || || || ||||| ||||| | ||||| | | Sbjct 229965 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG-T 229907 Query 37533 AAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 ||| ||||| | ||| | || | || |||||||| ||||| |||||||| || Sbjct 229906 AATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGC 229847 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 |||||||||| | ||||||| |||||||| ||| || || Sbjct 229846 TGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTC 229805 >seq1481 Length=155549662 Score = 260 bits (288), Expect = 2e-64 Identities = 520/762 (68%), Gaps = 14/762 (2%) Strand=Plus/Plus Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGT 36935 |||||||| | ||||| || || |||| || || || || || ||||||| ||| Sbjct 44508377 ACTCCCATCCTCTGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTC-----AGT 44508431 Query 36936 GATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACATGATA 36993 || ||||| ||| |||| |||||||| | | || | | | | ||| | | Sbjct 44508432 GAAATATTCTCCGTAAAGTCAAATGGGCTC--TCTACTCCGAAAACCTTGCTAAAACCCA 44508489 Query 36994 ATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTA 37053 |||| || ||| || || || ||||| || ||||||| |||||| | || | Sbjct 44508490 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCA 44508549 Query 37054 TACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCAT 37113 | ||||| || || || || | || || || ||| || |||||| ||||||| Sbjct 44508550 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT 44508609 Query 37114 CTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAAT 37172 ||| ||| | | || | || || | | ||| | | | | ||| |||| Sbjct 44508610 TGATAATTATTTCTCTCACTTTCTCCTCC-GATGGTTTGTGTACCAGGTGTTTGAACATC 44508668 Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||||||||| |||||||| |||||||| || || | |||||| ||||| || Sbjct 44508669 AAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 44508728 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 | || ||||| |||| ||| || | ||| ||||| | ||||||||| ||||||||| Sbjct 44508729 AGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 44508788 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || || ||||| ||||| || || ||||||| |||| ||| | || | | || Sbjct 44508789 AAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCC 44508848 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 |||||| | |||||||||||| || ||||| || ||| |||| || Sbjct 44508849 CCAATCCAGCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCA 44508907 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || |||||||| | ||||||| |||| | || ||||| ||||| || | ||||||| Sbjct 44508908 TTGAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATAC 44508967 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 |||||||| || || ||||| || || || || || ||||| ||||| | ||||| | | Sbjct 44508968 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG-T 44509026 Query 37533 AAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 ||| ||||| | ||| | || | || |||||||| ||||| |||||||| || Sbjct 44509027 AATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGC 44509086 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 |||||||||| | ||||||| |||||||| ||| || || Sbjct 44509087 TGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTC 44509128 Score = 145 bits (160), Expect = 9e-30 Identities = 313/460 (68%), Gaps = 11/460 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| | ||| |||||||| ||||| || || || | |||||| ||||| || | Sbjct 144080947 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144080888 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | ||| ||| || | ||| ||||| ||||||||| ||||||||||| Sbjct 144080887 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144080828 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAG--ACGTGTACCGAAAGTTGAAC---TATAAT 37350 | | ||| || ||||| ||| || | || || | | | ||| | | | Sbjct 144080827 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 144080768 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 | || |||| |||| ||||||| || ||||| || | |||||||| | Sbjct 144080767 CCCAA-TCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAGGCA-TCGTTTCAATGG 144080710 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | | |||||||| | |||||| ||||| | |||| || ||||| || | | ||| Sbjct 144080709 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATAT--GTGTCAATAAGGAGATTAT 144080652 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||||||| || || ||||| ||||| || || || ||||| || || | ||| | Sbjct 144080651 TTATTTCAGAATGCATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 144080592 Query 37531 ATAATT-GAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589 |||| |||| || | || ||| | | |||||||||| | ||||||||||| Sbjct 144080591 -TAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACAT 144080533 Query 37590 GCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTT 37629 |||||||| ||||| |||| || |||||||| ||||| Sbjct 144080532 GCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTT 144080493 >seq1 Length=228573443 Score = 147 bits (162), Expect = 3e-30 Identities = 237/337 (70%), Gaps = 8/337 (2%) Strand=Plus/Plus Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTAT 37347 |||| || ||| |||| ||||| ||||| ||||||| || | ||| | || | | Sbjct 139565255 AAAAAAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 139565314 Query 37348 AATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAA 37407 || ||| || | | ||||| |||||| || ||||| | |||||||| Sbjct 139565315 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTTC---TTGACACA---AGGTGTTTCAA 139565368 Query 37408 TTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAAC 37467 | | || |||||||| | |||||| |||| |||| ||||| ||||| || | || Sbjct 139565369 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 139565428 Query 37468 TATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTT 37527 ||||||||||||| || | ||||| || || || || || |||| ||||| | |||| Sbjct 139565429 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 139565488 Query 37528 CAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 | | |||| ||||| || | ||| | || | ||||||||||| ||||| |||||| Sbjct 139565489 CTG-TAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCA 139565547 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 || |||||||||||||| |||||| |||||||| Sbjct 139565548 CTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 139565584 >seq106 Length=111504155 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||||||||| || | || ||||| | |||| ||| || Sbjct 10258842 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10258783 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | |||||||| || ||||||||||| ||||| ||||| ||||| ||| Sbjct 10258782 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10258723 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 10258722 ACAACACGT 10258714 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 10260964 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 10260906 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 10260905 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 10260872 >seq793 Length=147911612 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 104140656 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 104140715 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || ||||||| ||||| || || ||||| | Sbjct 104140716 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 104140775 Query 37318 CTAC 37321 | || Sbjct 104140776 CCAC 104140779 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 36823 TTTTTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCC 36880 |||||||||||||| |||| || || || |||| | | || || ||||||| | Sbjct 104129961 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTG-TGGTTTCTGC-CATAACTGC 104130018 Query 36881 CATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATAT 36940 | ||||| ||| ||||||| | || || |||||||| |||||||||| || || Sbjct 104130019 AAAACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAAT 104130078 Query 36941 ATTTTCCATAAAATCAAATGGATT 36964 ||||||||||||||||| ||||| Sbjct 104130079 GTTTTCCATAAAATCAAAAGGATT 104130102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591987701381960