Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq1345 114 4e-21 >seq1345 Length=61309027 Score = 114 bits (126), Expect = 4e-21 Identities = 192/273 (70%), Gaps = 11/273 (4%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||||||||| ||| ||||||| ||||| || || || || || | Sbjct 54758889 TTCCTTCTGGATGTTATGG-AGAGTAGCTCCAAGGTCTGGCTTGGCTGCAAAACACTTTG 54758947 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 ||||||| || |||||||| | ||| ||| | ||| || || ||||||||||| | | Sbjct 54758948 TTGATGTAGGAGCTGGTGTCACAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTCT 54759007 Query 1078 TTAATTTTAGC-GATAAGCGTTT----TCATATTTCAAGAGGTGATAGGATTGCTCAGTT 1132 |||||||| || | || |||| ||| | || ||||||| | ||||| ||| | Sbjct 54759008 TTAATTTTTGCAAAGAAAAGTTTGAAGTCAAA----AAAAGGTGATCGAATTGCACAGCT 54759063 Query 1133 AATTTGTGAAAAGGCTGTTTT-TCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGG 1191 ||||||||| | | |||| |||| || || ||| | | || || || | Sbjct 54759064 CATTTGTGAACGGATTTTTTTATCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCA 54759123 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 |||||||||| | ||| ||||| |||||||||| Sbjct 54759124 AAAGGGGTTCAGGAGGTTTTGGCTCTACCGGAA 54759156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138608399431044