Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1345 196 9e-45 seq1588 129 1e-24 seq1481 129 1e-24 seq1024 95.1 2e-14 seq1 93.3 8e-14 >seq1345 Length=61309027 Score = 196 bits (216), Expect = 9e-45 Identities = 189/243 (78%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||||||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 13525940 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 13525881 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||| | ||||| || ||||| || | ||||||| |||||| Sbjct 13525880 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 13525821 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 13525820 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 13525761 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| || Sbjct 13525760 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 13525701 Query 241625 GAC 241627 ||| Sbjct 13525700 GAC 13525698 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 19320745 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 19320804 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | | |||||| |||||||||||| ||||| |||| |||||| ||||| Sbjct 19320805 TCCGTGTTCTGACTCTTGAGGGTCTTCACTTTCTCTTCCAGGCGCGAGATGCGCTCCAGC 19320864 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 19320865 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 19320924 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 19320925 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 19320957 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | |||||| | ||||| ||||||| Sbjct 13525903 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGT 13525844 Query 238986 TATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 13525843 TCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 13525789 >seq1588 Length=553333 Score = 129 bits (142), Expect = 1e-24 Identities = 460/710 (65%), Gaps = 18/710 (3%) Strand=Plus/Minus Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032 |||| ||||||| ||| || ||| ||||| || ||||| ||| ||||| |||| Sbjct 230416 ACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCT 230357 Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACT 48092 ||||| || || | |||||||| || || | | || | | || || Sbjct 230356 CGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTCTCTCACTTTCTCCT 230297 Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152 | || ||||||| |||||| ||| | | || ||| ||||| || | ||| || | Sbjct 230296 CCGATGGTTTGTGTACCAGGTGTTTGA---ACATCAAGCAAGCAAAATCACAGTGTAAAC 230240 Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 | || || | ||| || || | ||||| || ||| |||||||| || | | | Sbjct 230239 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCT 230180 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 |||||||||| || | || ||||| ||||| ||||||||||| || ||||| ||||| | Sbjct 230179 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAGG 230120 Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTG 48332 | | | || || | | ||| | ||||| |||||| | | ||||| |||| Sbjct 230119 CTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCACAAGGCCCAATCTG 230060 Query 48333 CCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG--CTTCTTGCACTCACC 48390 |||||||||||| || |||||||| || ||||| |||||| ||| | || Sbjct 230059 CCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAGAAATTCCTTTTCT---T 230004 Query 48391 TGCG-TCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCT 48446 || | || | || || | | || || | ||||| ||||| || | || | Sbjct 230003 TGGGATCTTTGATGTAAGTGTCAATAAGGAGACT---ATACATTTCAGAATGTATGTTTT 229947 Query 48447 CTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGA 48506 | || || || ||||| || ||||| | ||| || | ||| ||| | | | Sbjct 229946 CCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCTAA 229887 Query 48507 ATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACAT 48566 ||| ||||| || ||| ||||| ||||| ||||| || |||||||| | || |||| Sbjct 229886 ATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACAT 229827 Query 48567 GTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT-CCAGCCCTGTACGTCTTTGCCC 48625 | | |||| | ||| | | || | | | ||| |||| | | | ||| ||| | Sbjct 229826 GGGATATAAAATATCTCTCCTCG-GGCTTCGGGGATTCCCAGTGCCGAATGTCCTTGGAC 229768 Query 48626 AGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 |||||||| || || ||||||||||| || || || || ||||| Sbjct 229767 AGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 229718 >seq1481 Length=155549662 Score = 129 bits (142), Expect = 1e-24 Identities = 460/710 (65%), Gaps = 18/710 (3%) Strand=Plus/Plus Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032 |||| ||||||| ||| || ||| ||||| || ||||| ||| ||||| |||| Sbjct 44508517 ACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCT 44508576 Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACT 48092 ||||| || || | |||||||| || || | | || | | || || Sbjct 44508577 CGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTCTCTCACTTTCTCCT 44508636 Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152 | || ||||||| |||||| ||| | | || ||| ||||| || | ||| || | Sbjct 44508637 CCGATGGTTTGTGTACCAGGTGTTTGA---ACATCAAGCAAGCAAAATCACAGTGTAAAC 44508693 Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 | || || | ||| || || | ||||| || ||| |||||||| || | | | Sbjct 44508694 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCT 44508753 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 |||||||||| || | || ||||| ||||| ||||||||||| || ||||| ||||| | Sbjct 44508754 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAGG 44508813 Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTG 48332 | | | || || | | ||| | ||||| |||||| | | ||||| |||| Sbjct 44508814 CTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCACAAGGCCCAATCTG 44508873 Query 48333 CCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG--CTTCTTGCACTCACC 48390 |||||||||||| || |||||||| || ||||| |||||| ||| | || Sbjct 44508874 CCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAGAAATTCCTTTTCT---T 44508929 Query 48391 TGCG-TCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCT 48446 || | || | || || | | || || | ||||| ||||| || | || | Sbjct 44508930 TGGGATCTTTGATGTAAGTGTCAATAAGGAGACT---ATACATTTCAGAATGTATGTTTT 44508986 Query 48447 CTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGA 48506 | || || || ||||| || ||||| | ||| || | ||| ||| | | | Sbjct 44508987 CCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCTAA 44509046 Query 48507 ATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACAT 48566 ||| ||||| || ||| ||||| ||||| ||||| || |||||||| | || |||| Sbjct 44509047 ATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACAT 44509106 Query 48567 GTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT-CCAGCCCTGTACGTCTTTGCCC 48625 | | |||| | ||| | | || | | | ||| |||| | | | ||| ||| | Sbjct 44509107 GGGATATAAAATATCTCTCCTCG-GGCTTCGGGGATTCCCAGTGCCGAATGTCCTTGGAC 44509165 Query 48626 AGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 |||||||| || || ||||||||||| || || || || ||||| Sbjct 44509166 AGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 44509215 >seq1024 Length=135753878 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/104 (82%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 4037752 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 4037693 Query 213588 TTTGACTTTGCGTTGGCAG-AATCCTTGTAGAGCATGTAGGGGG 213630 || |||| || | ||| |||| ||||||||||| || |||| Sbjct 4037692 TTGCTCTTT-CGATTACAGGAATCTTTGTAGAGCATATACGGGG 4037650 >seq1 Length=228573443 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 58567760 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 58567819 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 58567820 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 58567879 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 58567880 ATGGGGGAC 58567888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931015228732160