Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1588 140 6e-28 seq1481 140 6e-28 seq106 84.2 4e-11 >seq1588 Length=553333 Score = 140 bits (154), Expect = 6e-28 Identities = 411/617 (67%), Gaps = 36/617 (6%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| |||||||| | || ||||||| |||| ||| | || Sbjct 229706 GATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGAC 229765 Query 25534 CTGGCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAGACGAGCAGC---ATTTTC 25588 ||| |||||||||| |||| ||| | | | | || |||| || ||||| Sbjct 229766 CTGTCCAAGGACATT--CGGCACTGGGAATCCC---CGAAGCCCGAGGAGAGATATTTTA 229820 Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 | | || ||| ||||||||||| |||||| ||||| || || ||| || | Sbjct 229821 TATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGG 229880 Query 25649 AGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || |||| | | ||| ||| ||| || ||| |||||||| || ||||| || Sbjct 229881 AGCGATTTAGCCAAATAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAAT 229938 Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTAC 25763 ||||| ||||| | || ||||| ||||| | || || || || ||||| | Sbjct 229939 TGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGACACTTACATCAA 229995 Query 25764 AGACGTCGCCGAGAGA--GATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAG 25821 ||| || | ||| | || || || |||||| || | || || | ||||| Sbjct 229996 AGA--TCCCAAAGAAAAGGAATTTCTCTTCAATGCCATTGAACG-ATGCCTTGTGTCAAG 230052 Query 25822 AGGAAGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAG 25878 | |||||| |||||| || ||||| ||| |||| ||||| | ||| || Sbjct 230053 AAGAAGGCAGATTGGGCCTTGTGCTGGATTGGGGACAA--AGAG-GCTACCTATGGTGAA 230109 Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || | |||||||| ||||| || || |||||||| || ||||| ||||| | || Sbjct 230110 CGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATA 230169 Query 25939 TTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 |||||||||||| | | | ||||| ||||| || || |||||||| || || || || Sbjct 230170 TTCTGGCTCAAG-AAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAG 230228 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA 26057 ||| || |||||| | ||| | |||||||| ||| || | | || ||| || | || Sbjct 230229 CAGAGATGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTCA---AACACCTGGTACA 230285 Query 26058 CAAACCTTCTCAAGAGA 26074 |||||| || | |||| Sbjct 230286 CAAACCATCGGAGGAGA 230302 >seq1481 Length=155549662 Score = 140 bits (154), Expect = 6e-28 Identities = 411/617 (67%), Gaps = 36/617 (6%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| |||||||| | || ||||||| |||| ||| | || Sbjct 44509227 GATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGAC 44509168 Query 25534 CTGGCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAGACGAGCAGC---ATTTTC 25588 ||| |||||||||| |||| ||| | | | | || |||| || ||||| Sbjct 44509167 CTGTCCAAGGACATT--CGGCACTGGGAATCCC---CGAAGCCCGAGGAGAGATATTTTA 44509113 Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 | | || ||| ||||||||||| |||||| ||||| || || ||| || | Sbjct 44509112 TATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGG 44509053 Query 25649 AGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || |||| | | ||| ||| ||| || ||| |||||||| || ||||| || Sbjct 44509052 AGCGATTTAGCCAAATAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAAT 44508995 Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTAC 25763 ||||| ||||| | || ||||| ||||| | || || || || ||||| | Sbjct 44508994 TGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGACACTTACATCAA 44508938 Query 25764 AGACGTCGCCGAGAGA--GATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAG 25821 ||| || | ||| | || || || |||||| || | || || | ||||| Sbjct 44508937 AGA--TCCCAAAGAAAAGGAATTTCTCTTCAATGCCATTGAACG-ATGCCTTGTGTCAAG 44508881 Query 25822 AGGAAGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAG 25878 | |||||| |||||| || ||||| ||| |||| ||||| | ||| || Sbjct 44508880 AAGAAGGCAGATTGGGCCTTGTGCTGGATTGGGGACAA--AGAG-GCTACCTATGGTGAA 44508824 Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || | |||||||| ||||| || || |||||||| || ||||| ||||| | || Sbjct 44508823 CGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATA 44508764 Query 25939 TTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 |||||||||||| | | | ||||| ||||| || || |||||||| || || || || Sbjct 44508763 TTCTGGCTCAAG-AAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAG 44508705 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA 26057 ||| || |||||| | ||| | |||||||| ||| || | | || ||| || | || Sbjct 44508704 CAGAGATGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTCA---AACACCTGGTACA 44508648 Query 26058 CAAACCTTCTCAAGAGA 26074 |||||| || | |||| Sbjct 44508647 CAAACCATCGGAGGAGA 44508631 >seq106 Length=111504155 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| ||||| || || |||||| |||||| | || |||||| Sbjct 10258721 GTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGG 10258780 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || ||||| || || || || ||||| || Sbjct 10258781 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGA 10258839 Query 26004 CGAGG 26008 |||| Sbjct 10258840 TGAGG 10258844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928328722218560