Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq866 288 1e-72 seq183 165 9e-36 seq1395 100 3e-16 seq252 96.9 4e-15 >seq866 Length=116767853 Score = 288 bits (318), Expect = 1e-72 Identities = 665/993 (67%), Gaps = 17/993 (2%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| || ||| || |||| ||| |||| ||| || | |||||| || ||| || ||| Sbjct 53757167 TGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCATGTCAAACTTA 53757108 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| ||||| || | || ||||||| || ||| || | || || | | Sbjct 53757107 TTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAAATG 53757051 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | || || || | ||| || ||||| |||| || || | || ||| Sbjct 53757050 CACACTGAGCGCACATGGACTCCATCGCAGGGAGGGTAGGGAGCACCCTTGGAAACATCA 53756991 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | || |||||||| || || || Sbjct 53756990 CCCTCAAAGTACTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCATAC 53756931 Query 160287 TTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 || | | ||| | || |||||| | | || || | || | ||||||||| | Sbjct 53756930 TTATGGCTGGCAGAGAGTGAGC-CCGGGA-CTTCAGGAATCCTTTGGATGGTGGCCCAGA 53756873 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404 | | || || |||||||| ||||| | | ||| ||||| |||| | |||| | Sbjct 53756872 GATACTCATCAGGGCTGTATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTCAT 53756813 Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 | | || || | || || || | || || ||||| || ||||| || || | Sbjct 53756812 TCTGTAGTACATACCCCACATACTCCCTACTGACCACGAAGTAGGCACTGCCAGAAAAAA 53756753 Query 160465 TCGGTAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521 ||| | | || ||| || | |||| | || ||||| | || | ||| | Sbjct 53756752 GAGGTGTTTCGAGTGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCCAT 53756696 Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581 | || | | | | |||||||||||||| | || || | |||||| | ||||| | Sbjct 53756695 TAACGACCTCATACCGCTTCTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTT 53756636 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | || |||| | || | | | || |||| | |||| || |||||||| || || | Sbjct 53756635 CCAGGTTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 53756576 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 ||||| || |||| || | ||||||| ||||||||| || || |||| | | | Sbjct 53756575 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATCGCATAGA 53756516 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 | ||| ||||||| || | || ||||| || |||||||| || || || || || ||| Sbjct 53756515 GATCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCT 53756456 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG-- 160819 | | | |||||||||||||| ||| ||||| || |||| |||| ||| | ||| Sbjct 53756455 CCAATCGGCTGGCCACAAAGACATTACTAAAACAGGAAGCGATGCCCATCACTG-CAGCT 53756397 Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 ||| | | | || | ||| |||||| || | ||| || | ||||||||| || Sbjct 53756396 AAATAGGA-ATCCTCGGATTTTGTGTCCACATGAATGCAGTAGAAATTCTGAGGCATATA 53756338 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 ||||||||| |||| ||| || | ||| || ||||| ||||| | ||| ||||| || || Sbjct 53756337 GATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGC 53756278 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 ||| |||||||| | ||| || ||| |||| | | || || || ||||||| Sbjct 53756277 TATTGGAAACTCCGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGAT 53756218 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| || ||| || | |||||||| ||||| Sbjct 53756217 GAAAGAAGAACAGTCACTGGTCATGTTTATATA 53756185 >seq183 Length=202621043 Score = 165 bits (182), Expect = 9e-36 Identities = 219/304 (72%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 168169 TTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCT 168228 |||| || ||||| || | || || || |||||||| |||||| | || ||||| |||| Sbjct 115468900 TTCCTGAGATCTTCCCAAAACCAAAGGTATTGAAGAGACACATGTAACACCCTTCATCCT 115468841 Query 168229 CCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCA 168288 ||| |||| ||||||| || || | ||||||||| |||| |||| ||| || ||||| | Sbjct 115468840 CCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGAGTCCCAGCTGGGTAATGTTTA 115468781 Query 168289 CACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGT 168348 || ||||| | ||| || | || || || |||||||||||||||||| |||||| Sbjct 115468780 TCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTTCTCGCTGAAGGTGACCATGT 115468721 Query 168349 TCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCT 168408 | || ||||| || || | |||||||| || || || || | || | | | | Sbjct 115468720 TTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATGAGGGCTTCCTGGGCATTTT 115468661 Query 168409 GCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGA 168468 |||| || ||| | | ||||| || |||| |||| | |||| ||||| || || || | Sbjct 115468660 GCAGAGAGCATTTTAAGGAAGCAGGTGTGTACAGCTGCTCTCTTTCATCCTGGGTCACCA 115468601 Query 168469 CCTG 168472 | || Sbjct 115468600 CTTG 115468597 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 |||||| | ||| || ||||| |||| || || |||| ||| |||||||| || Sbjct 115471449 GTTTGCTTAAAGTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 115471393 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| | || | ||||| || ||| || || ||||| Sbjct 115471392 CCCACCTGATTCTTAGGGTCTTTGATATGGAGGATGCTGGTAACAGACGTGGTCCCATTT 115471333 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | || | | || || || || ||||||||||| | | ||||||||||| | Sbjct 115471332 GGGTGAGACAGAGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAAGACC 115471273 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | || || || || || || |||||||| || ||||||| Sbjct 115471272 ATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 115471233 >seq1395 Length=66533130 Score = 100 bits (110), Expect = 3e-16 Identities = 235/347 (68%), Gaps = 12/347 (3%) Strand=Plus/Plus Query 160608 TTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTT 160667 || |||| | |||| || | |||||| || || | ||||| || ||| || | | | Sbjct 18396642 TTGAGCTTCCTGACAATTT-TAGGTTGGTTTTAATAGGAAAATCCATACTACAAACATGT 18396700 Query 160668 ATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCTCATGCAATTAATATCTG 160725 || | |||| |||| | || |||| |||||| |||||||||||| || | || | Sbjct 18396701 ATTAAGTACGTCCAGTCTGCACTCACT--GTGCAGAGGTCCCTCATGCAGTTGAGGTCAG 18396758 Query 160726 CCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGT 160785 || | || || ||||| | || || || | |||| | | || ||||||||||| || Sbjct 18396759 CCAGAACCCGACTCCACAAGGCATAAACCAGACTCTCCAACTGACAGGCCACAAAGATGT 18396818 Query 160786 TATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACATCTTATCCGCCTTTC 160842 | ||| | ||||| || || ||| || || | |||| | |||| | ||| Sbjct 18396819 TGCTGAA--ATGACACTATGCCCATCACTACAGCTAAAAAGGA-ATCTGCT-GATTTTTT 18396874 Query 160843 GGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGA 160902 |||||| || | |||||| | ||||||||| |||||||| || | | ||| || | Sbjct 18396875 TGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCTCTCTGGAGCCTGTCAA 18396934 Query 160903 ACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAAC 160949 ||| || | |||| ||| | || ||||| || ||||| |||||| Sbjct 18396935 GCATTTCAGTTTTATAATGAACCAGTATAGAATATGCTATTGGAAAC 18396981 >seq252 Length=181907262 Score = 96.9 bits (106), Expect = 4e-15 Identities = 235/353 (67%), Gaps = 10/353 (3%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||||| || | || |||||||| ||| || | ||| ||| ||| | ||| Sbjct 91798506 TGTCTCAGATGATCATTCAAACATTGGATGGCAAAGAGGTC---GTCGATGTCAAGCTTA 91798450 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| ||||| | | || ||||| | || ||| || | | ||| | | Sbjct 91798449 TTGGCAAACAAGTGGTGCTTGCAC---AGCATCCATTTCAAGTCACCAGCTCTGAAAATG 91798393 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || | | | ||| | || | | | || ||||| |||| || | | || ||| Sbjct 91798392 CACACCAAGTGCACGTGGTCCCCATCGTAGGGTGGGTAGGGAGCACCCTCGGAAACATCA 91798333 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | || ||| |||| || ||| || Sbjct 91798332 CCCTCCAAGTACTGCCACTTGACAAACCTGGCGACTGCATGCGTGTCAGACAAGTCATAC 91798273 Query 160287 TTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 || | | ||| | | | ||||| || | || |||| ||| | |||||| || | Sbjct 91798272 TTATGGCTTGCAGAG--AGTGAGCCGGGGACTTCAGGAATACTCTGGATGGTGGCTCAGA 91798215 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATT 160397 | || || || |||||||| ||||| | | || ||||| |||| | |||| Sbjct 91798214 GATGCTCATCAGGGCTGTATGTGTCTTGCGCTCACTCCATAAACTTTTGGATT 91798162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576898489797240