Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1588 147 3e-30 seq1481 147 3e-30 seq1 91.5 2e-13 >seq1588 Length=553333 Score = 147 bits (162), Expect = 3e-30 Identities = 300/443 (68%), Gaps = 9/443 (2%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || || ||||||||| ||||||||| ||||||||| || | ||| || |||||| Sbjct 230264 AAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 230205 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||| |||| ||| || ||||| ||||||||||| ||| || ||||||| Sbjct 230204 AGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 230145 Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333 || || || || || ||| ||||| |||| | | |||| || | | | ||| Sbjct 230144 AAGATGCCTTCTACTGCA-GCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTC 230086 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | ||||| ||||| ||| | | | ||| || || | || || || Sbjct 230085 CCCAATCCAGCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGC 230027 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| || | | || |||||||||| |||||| || |||||||| || | | | ||| Sbjct 230026 ATTGAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATA 229967 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||||||||||||| ||||||| || || || || | ||| || | | || || | Sbjct 229966 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 229907 Query 18514 ATATTGA---ATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 | ||| || | ||| ||||| || |||||||| ||||| ||||| || ||| Sbjct 229906 AATCTGAACTATTTGGCT---AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACT 229850 Query 18571 AGATGCGAAAAATGCCAAAACAT 18593 | ||| || || ||| ||||| Sbjct 229849 TGCTGCAAAGAAAACCAGAACAT 229827 >seq1481 Length=155549662 Score = 147 bits (162), Expect = 3e-30 Identities = 300/443 (68%), Gaps = 9/443 (2%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || || ||||||||| ||||||||| ||||||||| || | ||| || |||||| Sbjct 44508669 AAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 44508728 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||| |||| ||| || ||||| ||||||||||| ||| || ||||||| Sbjct 44508729 AGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 44508788 Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333 || || || || || ||| ||||| |||| | | |||| || | | | ||| Sbjct 44508789 AAGATGCCTTCTACTGCA-GCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTC 44508847 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | ||||| ||||| ||| | | | ||| || || | || || || Sbjct 44508848 CCCAATCCAGCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGC 44508906 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| || | | || |||||||||| |||||| || |||||||| || | | | ||| Sbjct 44508907 ATTGAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATA 44508966 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||||||||||||| ||||||| || || || || | ||| || | | || || | Sbjct 44508967 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 44509026 Query 18514 ATATTGA---ATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 | ||| || | ||| ||||| || |||||||| ||||| ||||| || ||| Sbjct 44509027 AATCTGAACTATTTGGCT---AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACT 44509083 Query 18571 AGATGCGAAAAATGCCAAAACAT 18593 | ||| || || ||| ||||| Sbjct 44509084 TGCTGCAAAGAAAACCAGAACAT 44509106 >seq1 Length=228573443 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||||||||||||||| |||||||| || | | | |||||||||||||||| || Sbjct 139565390 TTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGT 139565449 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA--TC-TCGC 18527 ||||||| || || || || ||| || | | || || | | |||| || | || Sbjct 139565450 TTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGC 139565509 Query 18528 TATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCA 18587 | ||||| || ||||| || ||||| ||||| || ||| | ||| || || |||| Sbjct 139565510 T---AAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 139565566 Query 18588 AAACA 18592 |||| Sbjct 139565567 GAACA 139565571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731465362768400