Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1197 136 7e-27 seq1283 113 8e-20 seq301 102 1e-16 seq252 95.1 2e-14 seq1332 93.3 8e-14 seq1395 91.5 3e-13 seq401 89.7 9e-13 seq208 87.8 3e-12 seq1056 84.2 4e-11 >seq1197 Length=81586097 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 51799166 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 51799225 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| || || |||||||| || | |||||| || Sbjct 51799226 GTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTG 51799285 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 51799286 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 51799345 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 51799346 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 51799405 >seq1283 Length=83181570 Score = 113 bits (124), Expect = 8e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | |||| || || ||||| | ||||| |||||| |||||| Sbjct 46388112 TTTCTTAGCACCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATT 46388171 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || | || |||| | | | || |||| ||| || |||||||| || ||| || || Sbjct 46388172 GTAGCCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTG 46388231 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| | Sbjct 46388232 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAA 46388291 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||| || | || || | || || || || | ||||| | ||| ||||||||||| Sbjct 46388292 CGGTTCAACCTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46388351 >seq301 Length=175400573 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| | || || | ||| | ||||| ||| || |||| | || || || Sbjct 117183171 ACCACCACGAAGCCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGA 117183112 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| | | | || |||| ||| || |||||||| || | ||| || || ||||| || Sbjct 117183111 CAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 117183052 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||||| || || || |||||||| ||| ||||| | | ||| | Sbjct 117183051 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGC 117182992 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || ||||| || | | | ||||| | ||| ||||||||||| Sbjct 117182991 CTCAAGGGTGATGGTCTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTT 117182941 Score = 84.2 bits (92), Expect = 4e-11 Identities = 353/522 (68%), Gaps = 64/522 (12%) Strand=Plus/Minus Query 126961 tataaataatgaatattg---ataaatgtattaatgaatatgataaacctatatattata 127017 |||| ||||| ||||| ||| || ||| || ||||| ||||| |||||| |||| Sbjct 146309855 TATATATAATATATATTATATATATATATATATATTAATAT-ATAAA--TATATAATATA 146309799 Query 127018 cttactatgatttatataga-aatatgaatgatataatttacaattatgataataATATT 127076 || ||| ||| | ||| | ||||| ||| ||||||| || || || |||||||||| Sbjct 146309798 AATA-TATAATTAA-ATATATAATATAAAT-ATATAATATATAA--ATTATAATAATATA 146309744 Query 127077 GTTAAAACATATATGGATATTTTATTATCTCAAATACAATTTTTATCAACTATA-AATAT 127135 || | |||||| || | ||| || | | ||| | | | ||| | |||| ||||| Sbjct 146309743 AATATATAATATAT--ATTATATATAATATAATATATATTATATATAATATATATAATAT 146309686 Query 127136 Taaaaaa---aTATGTAATACATATTCGAATAGAATGGTACATATATTATATATAGGATC 127192 || | | |||| ||||| |||| |||| || | |||||||||||||| Sbjct 146309685 AAATATATATATATATAATATATAT---AATATAA----ATATATATTATATATA----A 146309637 Query 127193 ATCTAAAGCGTATCATTTCa-atatattga-ataatttatata--aaaatttaactaata 127248 || || ||| ||| | ||||||| | ||||| |||||| | || ||| || || Sbjct 146309636 ATATA-----TATAATTAAATATATATTAATATAATATATATAATATAAATTA--TATTA 146309584 Query 127249 tacaatggtatttttatgatat-tatt-GAT-CCGTGTAT-TAATGTAGAAAGAATTTCA 127304 || ||| ||| | ||| |||| |||| || | ||| |||| || | | | | | | Sbjct 146309583 TATAAT-ATATATATATAATATATATTATATATAATATATATAATATAAATATATTATTA 146309525 Query 127305 TATAATAttttttttAATAGAAAATTATTTACAGAGGATGATATTGATCAATTTA-AAAA 127363 ||| ||| | | | ||||| ||| ||| || | | | |||| || ||| || | || Sbjct 146309524 TAT-ATAATATATATAATATAAA--TATATATATATGTAAATATACAT-AATATATATAA 146309469 Query 127364 TAAAAATCCTTTGatattaatatatgactatacagataattctaatataaaagaattatt 127423 || ||| | ||||| |||| | | |||||| ||||| |||||||| |||| Sbjct 146309468 TATAAA-----TTATATT-ATATGT-AATATACATATAATATAAATATAAA-----TATT 146309421 Query 127424 atatca-ctataatatgcagaataatataatattttatttaa 127464 |||| | |||||||| | ||||||| ||||| ||| ||| Sbjct 146309420 ATATTATATATAATATATAATATAATAT-ATATTATATATAA 146309380 >seq252 Length=181907262 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || |||| | | |||| |||| ||| || |||||||| || | ||| Sbjct 138260789 AATGTTGTAGTCAGACAAAGCACATCCGTCCTCCAGTTGCTTGCCAGCAAAGATCAGTCT 138260848 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 | | ||||| || |||||||| |||||||| || || ||||||||| | | || Sbjct 138260849 TTACTCGTCAGAAGGAATTCCTTCCTTATCTTGGATGTTGGCTTTTACATT--TCCTTGT 138260906 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| | | ||| || || ||| | |||| ||| | | || ||| | ||||| ||||| Sbjct 138260907 ATCCAAGGGTTCAACCTCAAGACTGATGGCTTTCTCCATAAAGGTTGTTATGAAAATCTG 138260966 Query 172067 CATTTT 172072 |||||| Sbjct 138260967 CATTTT 138260972 >seq1332 Length=78221452 Score = 93.3 bits (102), Expect = 8e-14 Identities = 274/404 (68%), Gaps = 34/404 (8%) Strand=Plus/Plus Query 126941 ATATGATACTTTTAACtat---ttataaataatgaatattgataaatgtattaatgaata 126997 |||||| | | | || ||| ||||| ||||| ||| |||| ||| ||||| | Sbjct 41588422 ATATGAAAATATAAATTATATATTATATATAATATATA---ATAA---TAT--ATGAAAA 41588473 Query 126998 tgataaacctatatattatacttac-tatgatttatatagaaatatg-aatgatataatt 127055 | ||||| ||||||||||| | ||| || ||||| |||||| ||| ||||| | Sbjct 41588474 T-ATAAAATTATATATTATATAAATATATAATATATATGAAAATATATAATTATATATTA 41588532 Query 127056 tacaat-tatgataataATATTGTTAAAACATATATGGATATTTTATTATCTCAAATACA 127114 || | | ||| |||||||||| | | ||| ||||| |||| ||||| | | ||| | Sbjct 41588533 TATATTATAT-ATAATAATATAGATGAAATATATAACTATAT---ATTATATAATATATA 41588588 Query 127115 ATTTTTATCAACTATAAATATTaaaaaaaTATGTAATACATATTCGAATAGAATGG-TAC 127173 ||| || || ||| ||| | | | | ||| ||||| |||| ||| | | || Sbjct 41588589 ATTAAGATGAAAAATATATAATTATATATTATATAATATATATAATTATATATTATATAA 41588648 Query 127174 ATATATTATATATAGGATCATCTAAAGCGTATCATTTCaat-atattgaataatttatat 127232 |||||||||||||| || || || | || || | || |||| |||||| ||||| Sbjct 41588649 ATATATTATATATATGAAAATATATA-ATTAATATATATATAATATATAATAATATATAT 41588707 Query 127233 aaaaatttaactaatatacaatggtatttttatgatattattGATCCGTGTATTAATGTA 127292 ||||| || ||||||| || ||| || ||| ||||| | || || ||| || Sbjct 41588708 GAAAATATA--TAATATATAA---TATATTGATG-TATTAATAAT-----AATAAATATA 41588756 Query 127293 GAAAGAATTTCATATAATAttttttttAATAGAAAAT-TATTTA 127335 | | || | ||||||||| || | ||||| | || |||||| Sbjct 41588757 TATAATATATTATATAATATATTATATAATATATTATATATTTA 41588800 >seq1395 Length=66533130 Score = 91.5 bits (100), Expect = 3e-13 Identities = 165/240 (69%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || ||| || Sbjct 17484960 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTT 17484901 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || ||| | | | || |||| || || | |||||| || | ||| | || Sbjct 17484900 GTAGTCAGACAAAACACATCCATCCTCCAGTTCTTG-CTAGCAAAGATCAGTCTTTACTG 17484842 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || | || |||| ||| ||| ||||| || Sbjct 17484841 ATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATCGTATCCGA 17484782 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 17484781 GGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTCACAAAAATCTGCATTTT 17484722 >seq401 Length=166211670 Score = 89.7 bits (98), Expect = 9e-13 Identities = 165/240 (69%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | |||| ||| || ||| || Sbjct 161377056 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGAATGTT 161376997 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || | | | | | || |||| ||| || |||||||| || | ||| || || Sbjct 161376996 GTAGTCAGACA--GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 161376939 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| |||| | Sbjct 161376938 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAA 161376879 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || | || || ||||| || || | | ||||| ||| | ||||||||||| Sbjct 161376878 GGGTTCAACCTTGAGGGTGATGGTCTTCCCC-TAAGGGTTTTTATGGAAATCTGCATTTT 161376820 >seq208 Length=194502333 Score = 87.8 bits (96), Expect = 3e-12 Identities = 245/356 (69%), Gaps = 39/356 (11%) Strand=Plus/Minus Query 167211 ATATTCTATAAAAGGAACTATATAGTAATAAGTTATATATATTCCTGATGTATACTTTAT 167270 |||||||||| | |||||| | ||| |||||||||| | || |||| | ||| Sbjct 33234808 ATATTCTATATTA-----TATATATTTATATATTATATATAT---TAATATATAATATAT 33234757 Query 167271 ATTAAAGTTATTTTGTTCata--attaattaacat-gatattatttgtatataatttata 167327 ||||| || | | || ||| ||| || | || ||||||| | |||||| ||||| Sbjct 33234756 ATTAATTATAATATATTTATATTATTTATATATATATATATTATATATATATATATTATA 33234697 Query 167328 tgaattacgaatattatataat-tttaatgatctattatatatattataaatggccgaat 167386 | |||| |||| ||||||| | |||| || ||||||||||| ||| ||| Sbjct 33234696 TATATTATACATATAATATAATATATAATTATATATTATATATAACATA------TTAAT 33234643 Query 167387 tttttatataataaatagttttat-tataacaaaatat-tggatattttgata-aata-a 167442 | |||| || || ||| ||||| ||| | | || | || ||| | | ||| |||| | Sbjct 33234642 ATATTATGTATTATATATATTTATATATTATATTATTTATGTATAATAT-ATATAATATA 33234584 Query 167443 ttatttttaCGTATACAT---TTTAGTCCGTCA-GTATCAATACATGTTAAAatatttat 167498 |||| |||| || |||| |||| | | | |||| ||| || || |||| ||| Sbjct 33234583 TTATATTTATATA-ACATATATTTA-TATATAATGTAT--ATATATTTT---ATATATAT 33234531 Query 167499 tgctttatatttacatactttattaatattttcattat-tatattttatttgtata 167553 | ||||||| ||||| ||||| ||||||| ||| |||||||||| | |||| Sbjct 33234530 T--TTTATATATACAT--TTTATATATATTTTTTGTATATATATTTTATATATATA 33234479 Score = 84.2 bits (92), Expect = 4e-11 Identities = 130/173 (75%), Gaps = 12/173 (7%) Strand=Plus/Minus Query 167211 ATATTCTATAAAAGGAACTATATAGTAATAAGTTATATATATTCCTGATGTATACTT-TA 167269 ||||| |||| | | |||||| | ||| |||||||||||| | || |||| || || Sbjct 65907395 ATATTATATATATTCATATATATAATTATATATTATATATATTCAT-ATATATAATTATA 65907337 Query 167270 TATTAAAGTTATTTTGTTCataattaatta-acatgatat-tatttgtatataatttata 167327 ||||| | ||| || | ||| |||||| | || |||| ||||| ||||| || |||| Sbjct 65907336 TATTATA--TATATTCAT-ATATATAATTATATATTATATATATTTATATATTATATATA 65907280 Query 167328 tgaattacgaatattatataat-tttaat-gatctattatatatattataaat 167378 | ||||| |||||||||||| | |||| || ||||||||||| |||| || Sbjct 65907279 T-AATTA--TATATTATATAATATATAATATATATATTATATATAATATACAT 65907230 >seq1056 Length=137163284 Score = 84.2 bits (92), Expect = 4e-11 Identities = 232/336 (69%), Gaps = 35/336 (10%) Strand=Plus/Plus Query 167229 TATATAGTAATAAGTTATATATATTCCTGATGTATACTTTATATTAAAGT-TATTTTGTT 167287 |||||| | ||| |||||||||| | || |||| | ||||||| ||| ||| || | Sbjct 85110314 TATATATTTATATATTATATATAT---TTATATATATTATATATTATAGTATATATT-TA 85110369 Query 167288 Cataattaattaacatgatattatttgtatataatttatatgaattacgaatattatata 167347 ||| || || ||| ||||| |||||| ||||||| |||| ||||| |||| Sbjct 85110370 TATATTTTAT-------ATA-TATTTATATATATTTTATAT--ATTATATATATTTTATA 85110419 Query 167348 attt---taatgatctat-tatatatat---tataa-atggccga-at-tttttatataa 167397 ||| || | || ||| ||||||||| ||||| || | || | |||||||| Sbjct 85110420 TTTTATATATTTATATATATATATATATTTATATAATATTATTTATATATATTTATATAT 85110479 Query 167398 taaatagttttattataacaaaatattggatattttgataaataattatttttaCGTATA 167457 || ||| |||| |||| | ||| || ||| ||| ||| || | ||| |||| |||| Sbjct 85110480 TATATATATTTA-TATATAATAATTTTATATA-TTTAATATATTA-TATATTTA--TATA 85110534 Query 167458 CATTTTAGTCCGTCAGTATCAATACATGTTAAAatatttattgctttatatttacatact 167517 |||||| | | ||| ||| || || |||| |||| | |||||||| ||| | Sbjct 85110535 TATTTTATTATTTATATAT-TATATATATT--TATATATATT--TGTATATTTATATATT 85110589 Query 167518 ttattaatattttcattattatattttatttgtata 167553 |||||| ||| | ||| |||||| ||| | |||| Sbjct 85110590 TTATTATTATATATATTTATATATTATATATTTATA 85110625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904633095124200