Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1588 114 4e-20 seq1481 114 4e-20 seq1283 96.9 1e-14 >seq1588 Length=553333 Score = 114 bits (126), Expect = 4e-20 Identities = 369/565 (65%), Gaps = 7/565 (1%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| | || || | || || |||||||||||||| || | | | | Sbjct 229679 TTTGTCATCTTCCCCGTCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCT 229738 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || ||||| | || || || | ||||| ||| ||||||||| ||| Sbjct 229739 TCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCACTGGGAATCCCCG 229798 Query 133196 ACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | || || | | ||||||| || ||| || | | || ||||| || |||||||| Sbjct 229799 AAGCCCGAGGAGAGATATTTTATATCCCATG-TTCTGGTTTTCTTTGCAGCAAGTGATGG 229857 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 || || ||||||||| | || |||| | |||||| | | |||||||| Sbjct 229858 CATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTACAGAAGCCCG 229917 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCT 133374 || ||||| | || ||||| |||||||| || |||||| | ||| | || Sbjct 229918 CTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCT 229977 Query 133375 AATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT-AGCG 133433 ||||| ||||||||||||||| || | ||| | || ||||| |||||| | || Sbjct 229978 TATTGACACTTACATCAAAGATCCCAAAGAAAAGGAATTTCTCTTCAATGCCATTGAACG 230037 Query 133434 AATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTG 133493 | | |||||| | || ||||| | || ||||| | ||||| |||||| | Sbjct 230038 A--TGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATTGGGGACAAAGAGG 230095 Query 133494 CGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTG 133553 | | | || | ||| | || || || |||| |||||| ||||| || || |||| Sbjct 230096 CTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTT 230155 Query 133554 CGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCT 133612 | || ||| || || || ||||| || || || || | ||||| || ||||| Sbjct 230156 C-TTTTGCATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCC 230214 Query 133613 AACGAACTTATTTCAAGGGACGAGG 133637 || ||||||||| || || |||| Sbjct 230215 AATGAACTTATTAGCAGAGATGAGG 230239 >seq1481 Length=155549662 Score = 114 bits (126), Expect = 4e-20 Identities = 369/565 (65%), Gaps = 7/565 (1%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| | || || | || || |||||||||||||| || | | | | Sbjct 44509254 TTTGTCATCTTCCCCGTCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCT 44509195 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || ||||| | || || || | ||||| ||| ||||||||| ||| Sbjct 44509194 TCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCACTGGGAATCCCCG 44509135 Query 133196 ACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | || || | | ||||||| || ||| || | | || ||||| || |||||||| Sbjct 44509134 AAGCCCGAGGAGAGATATTTTATATCCCATG-TTCTGGTTTTCTTTGCAGCAAGTGATGG 44509076 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 || || ||||||||| | || |||| | |||||| | | |||||||| Sbjct 44509075 CATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTACAGAAGCCCG 44509016 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCT 133374 || ||||| | || ||||| |||||||| || |||||| | ||| | || Sbjct 44509015 CTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCT 44508956 Query 133375 AATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT-AGCG 133433 ||||| ||||||||||||||| || | ||| | || ||||| |||||| | || Sbjct 44508955 TATTGACACTTACATCAAAGATCCCAAAGAAAAGGAATTTCTCTTCAATGCCATTGAACG 44508896 Query 133434 AATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTG 133493 | | |||||| | || ||||| | || ||||| | ||||| |||||| | Sbjct 44508895 A--TGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATTGGGGACAAAGAGG 44508838 Query 133494 CGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTG 133553 | | | || | ||| | || || || |||| |||||| ||||| || || |||| Sbjct 44508837 CTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTT 44508778 Query 133554 CGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCT 133612 | || ||| || || || ||||| || || || || | ||||| || ||||| Sbjct 44508777 C-TTTTGCATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCC 44508719 Query 133613 AACGAACTTATTTCAAGGGACGAGG 133637 || ||||||||| || || |||| Sbjct 44508718 AATGAACTTATTAGCAGAGATGAGG 44508694 >seq1283 Length=83181570 Score = 96.9 bits (106), Expect = 1e-14 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || ||||| || ||||| || || ||||||| ||||| || || Sbjct 7762510 ACCAGTCTCAGCAGTCTTGACAGCCGTGTCAATGAGCCCCTCACGACCCCCCATGGCGTG 7762451 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 7762450 GAAAAAGAACTCAGTGGGTGTGAGGCCGGCTAGGTAGGAGTTCTCCACAAAGCCACGGCT 7762391 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| || ||| |||| | ||||| ||||| |||| || || |||| |||| Sbjct 7762390 CTCAGGCCCATAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAAGCCAAATGG 7762331 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839 || ||||| || || |||||||||||||| | | | ||| | ||| |||| Sbjct 7762330 AATCCGCTTGCCCTCGACGTTCTGCTGTCCGACGACAGCAATGACCTGGGAAA 7762278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470979395737313