Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1056 116 3e-21 seq1283 113 3e-20 seq1580 111 1e-19 seq1481 111 1e-19 seq1197 105 5e-18 seq183 100 2e-16 seq1395 95.1 9e-15 seq301 87.8 1e-12 >seq1056 Length=137163284 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| ||||||| || || || || ||||| || ||||| || || | Sbjct 128407834 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAC 128407893 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || |||||| | ||||| || ||||| || || ||| Sbjct 128407894 AGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 128407953 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | ||| |||||| | || | |||||| | || || Sbjct 128407954 ATGCCTTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 128408013 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || ||||||||||| | || || || || |||||||| Sbjct 128408014 TCAAGGGTGATGGTTTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 128408060 >seq1283 Length=83181570 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||| |||| ||| || || || ||||| || ||||| || || | | Sbjct 34932436 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 34932495 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||| ||| || || || ||||| ||| | || | || ||||| || | ||| Sbjct 34932496 AGACTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCACGGGGA 34932555 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 | || ||||| ||||| | ||| |||||| |||| | |||| || | || ||| Sbjct 34932556 TTGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACT 34932615 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || | ||||| || | |||||| || || ||||||||||| Sbjct 34932616 TCAAGGGTGATGATCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 34932665 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| |||||||| || || ||||||||||| || || | | | || | ||| Sbjct 46388136 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTACATCCATC 46388195 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | ||| |||||||||||| || ||||| || || || || Sbjct 46388196 TTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 46388255 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || | |||| || | || || | || Sbjct 46388256 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCAACGGTTCAACCTTGAGGGTGGTTGT 46388315 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 46388316 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46388351 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||| |||| ||| || || || || || || ||||| || || | | Sbjct 38692117 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 38692058 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || ||||| ||| | || | || ||||| || || || Sbjct 38692057 AGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 38691998 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || || ||| |||| | |||||| | || || Sbjct 38691997 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 38691938 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || ||||| || | |||||| || || ||||||||||| Sbjct 38691937 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 38691888 >seq1580 Length=220409 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||||| | |||||| || | || ||||||||||| | || | | || || ||| Sbjct 148188 CAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATC 148247 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| ||||| || || Sbjct 148248 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCCTCCTTATC 148307 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| | || || |||| || ||||| || || || Sbjct 148308 CTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGATGGT 148367 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||| |||||| || || ||||||| ||| Sbjct 148368 CTTCCCCCTTAGGGTTTTCACGAAAATCTGCAGTTT 148403 >seq1481 Length=155549662 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||||| | |||||| || | || ||||||||||| | || | | || || ||| Sbjct 3586175 CAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATC 3586116 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| ||||| || || Sbjct 3586115 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCCTCCTTATC 3586056 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| | || || |||| || ||||| || || || Sbjct 3586055 CTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGATGGT 3585996 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||| |||||| || || ||||||| ||| Sbjct 3585995 CTTCCCCCTTAGGGTTTTCACGAAAATCTGCAGTTT 3585960 >seq1197 Length=81586097 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 51799190 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 51799249 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 51799250 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 51799309 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || || || || || Sbjct 51799310 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 51799369 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 51799370 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 51799405 >seq183 Length=202621043 Score = 100 bits (110), Expect = 2e-16 Identities = 153/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||||||||| || || ||||| ||||| | ||||| | || | | || || | Sbjct 28070177 CGCAGCACCAGGTGCAGGGTGGACTCTTTCCGGATGTTGCAGTCTGAGAGAGTTCGGCCA 28070118 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || |||||||||||| ||||| ||||| || || || ||| |||| ||| Sbjct 28070117 TCCTCCAGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGGATA-CCTCCTTG 28070059 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | ||||||| | || | |||||| | | || |||||||| || Sbjct 28070058 TCTTG-AATTTTGGCTTTGACATTCTCAATGGTGTCACTTGGCTTGACGTCAAGAGTGAT 28070000 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || ||||| || | ||| || ||||| |||||| Sbjct 28069999 GGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGC 28069966 >seq1395 Length=66533130 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/217 (70%), Gaps = 15/217 (7%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA-AT 29632 || ||| | |||||| || || || ||||||||||| || || ||| || Sbjct 38578305 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTC------------AGACAT 38578258 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || ||||| ||||||||| |||| | ||||||| |||| || ||||| || || || | Sbjct 38578257 CTTCCAGTTGCTTGCCAGCAAATATTAGTCTTTGCCGATCAGGAGGAATTCCTTCCTTAT 38578198 Query 29693 CTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 | || || || || || ||| || ||| || || || |||| || | || || || Sbjct 38578197 CCTG-GATCTTGGTCTTTACATTTCCTATCGTATCGGAGGGTTCAACCTTGAGGGTGATG 38578139 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788 ||| | || || | |||||| || || |||||||||| Sbjct 38578138 GTTCTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 38578102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | | ||| Sbjct 17484936 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAACACATCCATC 17484877 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || |||| || || |||| | |||| ||||| |||||| || ||||| || || || || Sbjct 17484876 CTCCAGTTCTT-GCTAGCAAAGATCAGTCTTTACTGATCAGGAGGAATTCCTTCCTTATC 17484818 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || || || | | |||||| || || || |||| || || || || || || Sbjct 17484817 CTGGGTCTTGGCCTTTATATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 17484758 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| ||||| ||||||||||| Sbjct 17484757 CTTCCCTGTGAGGGTTTTCACAAAAATCTGCATTTT 17484722 >seq301 Length=175400573 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| | || || | | || | ||| Sbjct 117183156 CAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGACAAAGTACATCCATC 117183097 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| || |||||| | |||| |||||||||||| || ||||| || || || || Sbjct 117183096 TTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 117183037 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || | |||| | ||||| || || || Sbjct 117183036 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGCCTCAAGGGTGATGGT 117182977 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | | | |||||| || || ||||||||||| Sbjct 117182976 CTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTT 117182941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385010518212309