Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq183 279 6e-70 seq1332 154 2e-32 seq1 150 2e-31 >seq183 Length=202621043 Score = 279 bits (308), Expect = 6e-70 Identities = 255/322 (79%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||||||||||||||||| || | || |||| |||| || || ||| | |||||||| Sbjct 115468597 CAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGTACACACCTGCTTCCTTAAAATGCTCT 115468656 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| | | | ||||| | || ||||| || |||||||||| || | | ||| Sbjct 115468657 CTGCAAAATGCCCAGGAAGCCCTCATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 115468716 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| | || || ||| | |||| ||||||||| ||||||| || ||||||||| Sbjct 115468717 GAAAACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGAC 115468776 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||| Sbjct 115468777 AAGATAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACC 115468836 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| | |||||| ||||| Sbjct 115468837 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTTTGGGAAGATCTCA 115468896 Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390 || ||||||||||||| ||| Sbjct 115468897 GGAACGGCCTGCCTCACCGTCT 115468918 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 8587 ATGGCTGTGTTTATTTCCCTGTGGTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAAT 8646 ||||| |||| | ||| | |||||| |||||||| | || || | |||||| Sbjct 47272615 ATGGCCCAGTTTGTGCCCCCGCTGTACTCCCTGGTGTTCACTGTGGGCCTCTTGGGCAAT 47272674 Query 8647 GCCCTGGTGATCCTAGTCCTCATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTC 8706 | ||||| | | |||||||||| |||| ||||||| | || ||||||||||||| | Sbjct 47272675 GTGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTAC 47272734 Query 8707 CTGTTCAACCTGGCCCTTGGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCAC 8766 ||| ||||||||||| || |||||||| | | |||||||| || || ||||| ||| Sbjct 47272735 CTGCTCAACCTGGCCATTTCAGACCTGCTCTTCCTCTTCACCCTTCCATTCTGGATCCAC 47272794 Query 8767 T 8767 | Sbjct 47272795 T 47272795 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||| ||| | |||| || |||| || ||||||| |||| ||||| | Sbjct 47211095 GTACTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACATCCTGGTGGTCCTGGTCCTTGT 47211036 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||| | | |||||||| ||||| ||| | ||||||||| || ||| Sbjct 47211035 GCAATACAAGAGGCTAAAAAACATGACCAGCATCTACCTCCTGAACCTGGCCATTTCTGA 47210976 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 |||||| | | ||||| || ||||| ||||| Sbjct 47210975 CCTGCTCTTCCTGTTCACGCTTCCCTTCTGGAT 47210943 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | ||||| | | ||||| ||||| ||||| |||| ||| Sbjct 47380668 TACTCACTGGTGTTCATCTTTGGTTTTGTGGGCAACATGCTGGTCATCCTCATCCTGATA 47380727 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| ||||| | || |||||| | |||| |||| ||||||||||| | |||| Sbjct 47380728 AACTGCAAAAGGCTGAAGAGCATGACTGATATCTACCTGCTCAACCTGGCCATCTCTGAC 47380787 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | || | || ||||||| ||| ||||| Sbjct 47380788 CTGTTTTTCCTTCTTACTGTCCCCTTCTGGGCTCACT 47380824 >seq1332 Length=78221452 Score = 154 bits (170), Expect = 2e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 17408360 CTTCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAA 17408419 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| ||||| ||||||||||||||||| || ||||| | || Sbjct 17408420 AGGCACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTT 17408479 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| ||||| || ||||||||||| Sbjct 17408480 CACCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 17408524 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||| ||| || | |||| Sbjct 17416185 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGTG 17416244 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | | ||| || |||| || | ||| |||||||| ||||||| Sbjct 17416245 GAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCC 17416304 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || ||||| |||| | ||||| ||| ||| || Sbjct 17416305 TTGGAAGACAGCTCTTTAGCATTTGTGGATCCCTGGAAGA 17416344 >seq1 Length=228573443 Score = 150 bits (166), Expect = 2e-31 Identities = 132/167 (79%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 185657985 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 185657926 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| || || ||| ||||| |||| |||||| |||| Sbjct 185657925 TGCCCCAAGCTGAGAACCA------------AGACCCAGACATCAAGGTGCATGTGAACT 185657878 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| || || |||||||| || ||||||| ||||| ||| Sbjct 185657877 CCCTGGGGGAGAACCTGAAGACCCTCAGGCTGAGGCTACGGCGCTGT 185657831 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || | |||||||| |||||||||||||| || || || ||||||| Sbjct 185655654 AGCTCCAAGAGAAAGGCATCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 185655595 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 185655594 TAGAAGCCTACATGACAA 185655577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583163806773600