Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1197 129 5e-25 seq1056 116 3e-21 seq1283 111 1e-19 seq301 105 6e-18 seq1580 95.1 1e-14 seq1481 95.1 1e-14 seq1395 89.7 5e-13 seq401 82.4 7e-11 >seq1197 Length=81586097 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||| ||||| || | | Sbjct 51799176 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 51799235 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||||||||| || ||||| |||| | |||||| || | |||| Sbjct 51799236 AAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 51799295 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||| || | ||| ||| Sbjct 51799296 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 51799355 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || ||||| | |||||||| || ||||||||| || Sbjct 51799356 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 51799406 >seq1056 Length=137163284 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| ||| || || |||||||| || | || ||| ||| | || || Sbjct 128407851 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 128407910 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| ||||||| ||||||||| | ||||| || |||||||| Sbjct 128407911 CAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 128407970 Query 35647 GATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 |||| ||||||| ||| | | ||||| || | || ||||| | ||||| |||| Sbjct 128407971 GATC-TTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTT 128408029 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | || ||||| || |||||||| Sbjct 128408030 TGCCAGTGAGTGTCTTCACGAAGATCTGCAT 128408060 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 128406275 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAA 128406334 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | ||||| || |||||||| |||| ||||||| || Sbjct 128406335 GATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATC-TTTGCTTTGACGT 128406393 Query 35665 T-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| || | || ||||| | ||||| || || || || | || |||| Sbjct 128406394 TCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGTGTCTTCA 128406453 Query 35724 CAAATATCTGCAT 35736 |||| || ||||| Sbjct 128406454 CAAAGATTTGCAT 128406466 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| ||| || || |||||||| || | || ||| ||| | || || Sbjct 128406941 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 128407000 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| ||||||| ||||||||| | ||||| || |||||||| Sbjct 128407001 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 128407060 Query 35647 GATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 |||| ||||||| ||| | | ||||| || | || ||||| | ||||| || | Sbjct 128407061 GATC-TTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 128407119 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | || ||||| || || ||||| Sbjct 128407120 TGCCAGTGAGTGTCTTCACGAAGATTTGCAT 128407150 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 128406053 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAA 128406112 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | ||| | || |||||||| ||||||| ||| | | | Sbjct 128406113 GATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATT 128406172 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| ||| ||||| | ||||| || ||||| |||| || ||||| Sbjct 128406173 CTCGATGGTGTC-ATCG--TCCACTCGGAGAGTGATGGTCTTACCAGTCAGGGTCTTCAC 128406229 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 128406230 GAAGATCTGCAT 128406241 >seq1283 Length=83181570 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 38692082 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAA 38692023 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || ||||| ||| |||||| ||||| | | Sbjct 38692022 GATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 38691963 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||| | ||||| || || || || | |||||||| Sbjct 38691962 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCAC 38691903 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 38691902 GAAGATCTGCATTTTG 38691887 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 38692310 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 38692251 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || ||| |||||| ||||| | | Sbjct 38692250 GATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 38692191 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | ||||| |||| ||||| || || || |||| || ||||| Sbjct 38692190 TTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 38692131 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 38692130 GAAGATCTGCAT 38692119 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 38692538 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 38692479 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || || |||||| ||||| | | Sbjct 38692478 GATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATT 38692419 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 38692418 TTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCAC 38692359 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 38692358 GAAGATCTGCAT 38692347 >seq301 Length=175400573 Score = 105 bits (116), Expect = 6e-18 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 ||||| |||||||| | ||||||||| | ||| | ||| |||||||||||| |||| Sbjct 117183177 TTTATCACCACCACGAAGCCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTA 117183118 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 || | ||| || | | || ||||| ||||| || ||||| |||| | ||||| || Sbjct 117183117 GTCAGACAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATC 117183058 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 | ||||| | ||||| ||| |||||| ||| | | || | | ||| || | Sbjct 117183057 AGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGG 117182998 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||| |||| | ||||| || || || | | |||||||| || ||||||||| || Sbjct 117182997 TTCAGCCTCAAGGGTGATGGTCTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTTG 117182940 >seq1580 Length=220409 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 35511 CACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCA 35570 |||||| | |||| || | ||| | ||| |||||||||||||||| | || | || Sbjct 148175 CACCACAAAGTCTCAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACA 148234 Query 35571 AGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAA 35630 | || || | || ||||| ||||| || ||||| |||| | ||||| || | ||||| Sbjct 148235 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAA 148294 Query 35631 CGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCT 35690 | |||||| ||| |||||| ||| | | || | | || || | ||| |||| Sbjct 148295 TTCCCTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCT 148354 Query 35691 CCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 | | ||||| || || ||| | | |||||||| || ||||||| Sbjct 148355 CAAGGGTGATGGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCA 148399 >seq1481 Length=155549662 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 35511 CACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCA 35570 |||||| | |||| || | ||| | ||| |||||||||||||||| | || | || Sbjct 3586188 CACCACAAAGTCTCAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACA 3586129 Query 35571 AGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAA 35630 | || || | || ||||| ||||| || ||||| |||| | ||||| || | ||||| Sbjct 3586128 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAA 3586069 Query 35631 CGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCT 35690 | |||||| ||| |||||| ||| | | || | | || || | ||| |||| Sbjct 3586068 TTCCCTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCT 3586009 Query 35691 CCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 | | ||||| || || ||| | | |||||||| || ||||||| Sbjct 3586008 CAAGGGTGATGGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCA 3585964 >seq1395 Length=66533130 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||||||||| || | | Sbjct 17484950 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 17484891 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || | | || ||||| | ||| | ||||| |||| | | ||| || | |||| Sbjct 17484890 AAAACACATCCATCCTCCAG-TTCTTGCTAGCAAAGATCAGTCTTTACTGATCAGGAGGA 17484832 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| | |||| ||| | | || | | ||| || | ||| ||| Sbjct 17484831 ATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATCGTATCCGAGGGTTCAACC 17484772 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || || || | ||||||||||| ||||||||| || Sbjct 17484771 TCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTCACAAAAATCTGCATTTTG 17484721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/228 (68%), Gaps = 11/228 (5%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||| | ||| | ||| |||||||||||||||||| || | | Sbjct 38578319 CCACCATGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 38578260 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || ||||| ||||| || |||||||| | | ||| | || | |||| Sbjct 38578259 A-----------TCTTCCAGTTGCTTGCCAGCAAATATTAGTCTTTGCCGATCAGGAGGA 38578211 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||| ||| | ||| ||| Sbjct 38578210 ATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTCCTATCGTATCGGAGGGTTCAACC 38578151 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 | | ||||| ||| | || || | |||||||| || ||||||||| Sbjct 38578150 TTGAGGGTGATGGTTCTCCCTGTAAGGGTTTTCACGAAAATCTGCATT 38578103 >seq401 Length=166211670 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/231 (68%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||||||||| || | | Sbjct 161377046 CCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGAATGTTGTAGTCAGAC 161376987 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || | | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 161376986 A--GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 161376929 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | | | || | ||| ||| Sbjct 161376928 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGGTTCAACC 161376869 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 | | ||||| || || ||| | | ||||| | | ||||||||| || Sbjct 161376868 TTGAGGGTGATGGTCTT-CCCCTAAGGGTTTTTATGGAAATCTGCATTTTG 161376819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450543133440920