Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1588 275 5e-69 seq1481 275 5e-69 seq1 140 3e-28 seq106 113 4e-20 seq301 104 2e-17 seq1332 89.7 4e-13 seq793 89.7 4e-13 seq1283 84.2 2e-11 >seq1588 Length=553333 Score = 275 bits (304), Expect = 5e-69 Identities = 619/918 (67%), Gaps = 28/918 (3%) Strand=Plus/Plus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | || ||| || | | |||||| | || || | | || ||||| || |||| Sbjct 229656 TGCTGAGAGGAAACCCTTGCCGCTTTGTCATCTTCCCCGTCGAGTACCATGATATCTGGC 229715 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||| || || || |||| || || ||||| | || || || || || | || | Sbjct 229716 AGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGG 229775 Query 43797 ACTTA--GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || | |||| | ||| | | || || | || | | |||||||||| ||| | Sbjct 229776 ACATTCGGCAC-TGGGAATCCCCGAAGCCCG-AGGAGAGATATTTTATATCCCATGTTCT 229833 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 || || ||||| || || || || ||||| |||||||||||||| || ||| || Sbjct 229834 GGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCA 229893 Query 43915 AGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 | |||||| |||| ||||||| || ||||| ||||| || ||||||||||| ||||| | Sbjct 229894 AATAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACA 229952 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | ||||| |||||||| ||||| || || || || |||||||||||| | || ||| Sbjct 229953 TACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATCAAAGATCCCAAAGAAAAGG 230012 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 | | || ||||| || | ||| | ||| | || | || ||||| |||||| Sbjct 230013 AATTTCTCTTCAATGCCATTG-AACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCT 230071 Query 44094 TTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | ||||| | | | | | | | ||| ||||| |||| || || || | | Sbjct 230072 TGTGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAG 230131 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210 | |||||||| |||||||| || || ||||| | ||||| ||| | ||||||||||| Sbjct 230132 TAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGAC 230191 Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270 ||||||||| | |||||||| ||||| | || || | ||||| || ||||| || | Sbjct 230192 CGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTG 230251 Query 44271 ATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTA 44330 |||||||||||||| | | | | || | | || || || || ||| | | | Sbjct 230252 ATTTTGCTTGCTTGATGTTCAAACACCTGGTACAC---AAACCATCGGAGGAGAAAGTGA 230308 Query 44331 CAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTG 44390 ||| || || | | || || |||||||||||||||| | || || || |||| Sbjct 230309 GAGAAATAATTATCAATGCTGTTCAGATAGAACAAGAATTCCTCACCGAGGCCTTGCCTG 230368 Query 44391 TAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGAT 44449 | || | || || ||||| || || | | ||||| ||||| ||||| | | ||||| Sbjct 230369 TGAAGCTCATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGAC 230427 Query 44450 CGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTGA 44505 | | | |||||||||||| | | || | || ||| | | ||| ||||| Sbjct 230428 AGACTTATGCTGGAACTGGGTT----TTAGCAAGGTTTTCGGAGTAGAGAGCCCATTTGA 230483 Query 44506 TTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGA 44565 |||| ||| |||||||| || ||| || ||||| ||||| | | || || || Sbjct 230484 CTTTACGGAGAATATTTCACTGAAAG-----ACTAACTTCTTTGAGAGGGGAGTAGGCGA 230538 Query 44566 ATATCAGCGAATGGGCGT 44583 |||||| | ||||| || Sbjct 230539 GTATCAGAGGATGGGAGT 230556 >seq1481 Length=155549662 Score = 275 bits (304), Expect = 5e-69 Identities = 619/918 (67%), Gaps = 28/918 (3%) Strand=Plus/Minus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | || ||| || | | |||||| | || || | | || ||||| || |||| Sbjct 44509277 TGCTGAGAGGAAACCCTTGCCGCTTTGTCATCTTCCCCGTCGAGTACCATGATATCTGGC 44509218 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||| || || || |||| || || ||||| | || || || || || | || | Sbjct 44509217 AGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGG 44509158 Query 43797 ACTTA--GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || | |||| | ||| | | || || | || | | |||||||||| ||| | Sbjct 44509157 ACATTCGGCAC-TGGGAATCCCCGAAGCCCG-AGGAGAGATATTTTATATCCCATGTTCT 44509100 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 || || ||||| || || || || ||||| |||||||||||||| || ||| || Sbjct 44509099 GGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCA 44509040 Query 43915 AGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 | |||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| | Sbjct 44509039 AATAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACA 44508981 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | ||||| |||||||| ||||| || || || || |||||||||||| | || ||| Sbjct 44508980 TACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATCAAAGATCCCAAAGAAAAGG 44508921 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 | | || ||||| || | ||| | ||| | || | || ||||| |||||| Sbjct 44508920 AATTTCTCTTCAATGCCATTG-AACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCT 44508862 Query 44094 TTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | ||||| | | | | | | | ||| ||||| |||| || || || | | Sbjct 44508861 TGTGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAG 44508802 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210 | |||||||| |||||||| || || ||||| | ||||| ||| | ||||||||||| Sbjct 44508801 TAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGAC 44508742 Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270 ||||||||| | |||||||| ||||| | || || | ||||| || ||||| || | Sbjct 44508741 CGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTG 44508682 Query 44271 ATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTA 44330 |||||||||||||| | | | | || | | || || || || ||| | | | Sbjct 44508681 ATTTTGCTTGCTTGATGTTCAAACACCTGGTACAC---AAACCATCGGAGGAGAAAGTGA 44508625 Query 44331 CAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTG 44390 ||| || || | | || || |||||||||||||||| | || || || |||| Sbjct 44508624 GAGAAATAATTATCAATGCTGTTCAGATAGAACAAGAATTCCTCACCGAGGCCTTGCCTG 44508565 Query 44391 TAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGAT 44449 | || | || || ||||| || || | | ||||| ||||| ||||| | | ||||| Sbjct 44508564 TGAAGCTCATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGAC 44508506 Query 44450 CGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTGA 44505 | | | |||||||||||| | | || | || ||| | | ||| ||||| Sbjct 44508505 AGACTTATGCTGGAACTGGGTT----TTAGCAAGGTTTTCGGAGTAGAGAGCCCATTTGA 44508450 Query 44506 TTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGA 44565 |||| ||| |||||||| || ||| || ||||| ||||| | | || || || Sbjct 44508449 CTTTACGGAGAATATTTCACTGAAAG-----ACTAACTTCTTTGAGAGGGGAGTAGGCGA 44508395 Query 44566 ATATCAGCGAATGGGCGT 44583 |||||| | ||||| || Sbjct 44508394 GTATCAGAGGATGGGAGT 44508377 >seq1 Length=228573443 Score = 140 bits (154), Expect = 3e-28 Identities = 144/186 (77%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 43836 ATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATT 43895 |||||||||| ||| |||| || ||||| || || || || ||||| |||||||| | Sbjct 139565584 ATTTTATATCCCGTGTTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACT 139565525 Query 43896 TGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 |||| || ||| ||||||||||| ||||| |||||| || ||||| |||| || Sbjct 139565524 TGGTGGAGCGATTTAGCCAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGACTTC 139565466 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 ||||||||||| ||||| | ||||| |||||||| ||||| || || || || ||||| Sbjct 139565465 CAAATTGCCATGGAAAACACACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATA 139565406 Query 44015 AAAGAT 44020 |||||| Sbjct 139565405 AAAGAT 139565400 >seq106 Length=111504155 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 10256358 CAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 10256416 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 10256417 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 10256465 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| |||| || ||||| | |||||||||||||||||||| || || |||||| Sbjct 10258709 GGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGTTCTTTTGCG 10258768 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 10258769 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTT 10258828 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 10258829 ATTAGCAGAGATGA 10258842 >seq301 Length=175400573 Score = 104 bits (114), Expect = 2e-17 Identities = 253/380 (67%), Gaps = 9/380 (2%) Strand=Plus/Minus Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275 ||| | || || ||||||| || | |||| || ||| | ||||| | || || ||| Sbjct 29317609 GTGCTCCAGTTCCTAGGACTCTACAAGAAATTTGGAAAACTTGTATTTTTGGGTTTGGAC 29317550 Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAA---TACA-ATTGCATGAAAGAGCA 47331 || ||||| ||||| | | || |||||||||||| ||| |||| | || || Sbjct 29317549 AACGCAGGCAAAACCACTCTTCTTCACATGCTCAAAGATGACAGATTGGGTCAA----CA 29317494 Query 47332 TAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCAC 47391 | || ||| |||||||||| || ||| | |||| ||||||||| || || |||| || Sbjct 29317493 TGTTCCAACACTACATCCGACATCAGAAAAGCTAATAATTGCTGGAATGACTTTTACAAC 29317434 Query 47392 ATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGT 47451 ||||| | || ||||||| ||||| || | || |||||||| | || | | Sbjct 29317433 TCTTGATCTTGGTGGACACAAGCAAGCATGTCAGGTTTGAAAAAATTATCTCCAAGCAAT 29317374 Query 47452 TGATGCTATAGTTTATATTGTAGACTGTGCAGATTTGACTAGACTGACAGAGGCAAAAAT 47511 | ||| || |||| | | || || | ||||||| || | || | || | ||| | Sbjct 29317373 TAATGAGATTGTTTTTCTGGTGGATTCTGCAGATCATTCTGGCCTCATGGAATCTAAAGT 29317314 Query 47512 CGAATTCGATGCGTTGTTAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGG 47571 || | |||| || | | |||||| | || | |||| || || | | ||||| Sbjct 29317313 TGAGCTTAATGCTTTAATGACTGATGAAATAATATCCAATGTGCCAATCCTTATATTGGG 29317254 Query 47572 CAATAAAATCGACA-AACAA 47590 || ||||| |||| ||||| Sbjct 29317253 TAACAAAATAGACAGAACAA 29317234 >seq1332 Length=78221452 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | || ||||| || || || |||| |||| Sbjct 17408526 TGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 17408467 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || ||||| || |||||||| || || || || || ||||| || | Sbjct 17408466 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTCGGTGTGCCTTTCAACATCGCCA 17408407 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||||||||| |||||||| ||| Sbjct 17408406 GCTACGCCCTGCTCACGTACATGATTGCGCAC 17408375 >seq793 Length=147911612 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 104130104 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 104130045 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 104130044 AACGAGTTTCAGAGTATCAGCG 104130023 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | ||| || ||| ||||||| ||| | ||||||| Sbjct 104154068 GGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 104154009 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 104154008 CTTCCTTCTGGACAGCAGAAGAGGT 104153984 >seq1283 Length=83181570 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 77394 TCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGC 77453 |||| || || | |||||| | |||||| ||||| | |||||| || || ||||| | Sbjct 39024563 TCCACCCATTTTTCTTCCAACCTTGAACCCAGTTAGTTATACCATTTATCGTAAACATAC 39024504 Query 77454 TGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGG 77513 ||||||| || | ||||| || ||||| || | ||| ||||||| | || ||| Sbjct 39024503 TGTCTGTATACAGAACCAGTTTATTGATGTTCTGAGTCTGTGCTTGTTCAATGGCCTTGC 39024444 Query 77514 ATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTG 77547 | || || || ||||| || | ||||||||||| Sbjct 39024443 AGGCTGCATGAATTTCCGCTCTTTGGTTTGTCTG 39024410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397240689266245