Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq1332 116 3e-21 >seq1332 Length=78221452 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||| ||||||||||| ||||| || ||| || || ||||| || |||||| Sbjct 17408367 CCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACA 17408426 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || |||||||| ||||||||||| || || ||||| || || || | | | | |||| Sbjct 17408427 CCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACA 17408486 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || || || |||| || ||||||| |||||| Sbjct 17408487 TAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 17408525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391733274372187