Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq183 100 3e-16 seq1283 91.5 2e-13 seq1588 87.8 2e-12 seq1481 87.8 2e-12 seq106 86.0 7e-12 >seq183 Length=202621043 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 26191222 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 26191281 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 26191282 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 26191341 Query 117425 ATCGT 117429 || || Sbjct 26191342 ATAGT 26191346 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 26191222 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 26191281 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | |||||| ||||| || |||||||||||||||||| Sbjct 26191282 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 26191341 Query 152149 ATCGT 152153 || || Sbjct 26191342 ATAGT 26191346 >seq1283 Length=83181570 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | || || | |||||||||||| |||| || |||||||| Sbjct 17204696 GTAAAGATGTATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 17204637 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 17204636 CCAATGGGCTGCAAGAGGTTTAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 17204577 Query 152149 ATCGT 152153 || || Sbjct 17204576 ATGGT 17204572 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || ||||| || | || |||| ||||||||||||| || | ||||| || || Sbjct 17204696 GTAAAGATGTATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 17204637 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||||||||| || || ||| |||||||| || |||||||| |||| | Sbjct 17204636 CCAATGGGCTGCAAGAGGTTTAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 17204577 Query 117425 ATCGT 117429 || || Sbjct 17204576 ATGGT 17204572 >seq1588 Length=553333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||| ||||||| ||||||||||| |||| || ||| Sbjct 230240 CCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTC 230181 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || || | || |||||| |||||||||||||| || || ||| Sbjct 230180 TTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAG 230121 Query 74889 GCGACAAGGCGTT 74901 || |||| |||| Sbjct 230120 GCTACAACACGTT 230108 >seq1481 Length=155549662 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||| ||||||| ||||||||||| |||| || ||| Sbjct 44508693 CCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTC 44508752 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || || | || |||||| |||||||||||||| || || ||| Sbjct 44508753 TTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAG 44508812 Query 74889 GCGACAAGGCGTT 74901 || |||| |||| Sbjct 44508813 GCTACAACACGTT 44508825 >seq106 Length=111504155 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||||| Sbjct 10258842 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10258783 Query 74832 AACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || || | | || || ||||| ||||| |||||||| || |||||||| Sbjct 10258782 AGCCAGAATATCGACGCA-AAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGC 10258724 Query 74891 GACAAGGCGTT 74901 |||| |||| Sbjct 10258723 TACAACACGTT 10258713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546911959950200