Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq866 91.5 2e-13 seq1155 89.7 7e-13 >seq866 Length=116767853 Score = 91.5 bits (100), Expect = 2e-13 Identities = 235/356 (66%), Gaps = 4/356 (1%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || |||||||| || ||| | Sbjct 53756257 GAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAGATTGAAATGCTT 53756316 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | || |||||||||||||| || ||||| |||||||| | || |||||| | Sbjct 53756317 GACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATTCATGTGGACACA 53756376 Query 13803 AAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 || |||| || | || | | | || || |||||| || || ||| | Sbjct 53756377 AAATCCGAGGATTCCTATTTAGC--TGCAGTGATGGGCATCGCTTCCTGTTTTAGTAATG 53756434 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | ||||| ||| || | ||||| || | || ||||| || || ||||| | Sbjct 53756435 TCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGCCGGGTTCAGGCTG 53756494 Query 13921 ACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACC 13980 |||||| ||||||| ||| || | || | || |||| |||| || | || | Sbjct 53756495 ACCTCAACTGCATGAAGGATCTCTATGCGATGAGTGCAAACTGGAAGTACTTGATAAATC 53756554 Query 13981 TGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAG 14036 | || || ||||| || || | || |||||||| || || || || ||| ||| Sbjct 53756555 TTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTCAGGAAGCTCAAG 53756610 >seq1155 Length=83230942 Score = 89.7 bits (98), Expect = 7e-13 Identities = 184/272 (68%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGG--GACGC 14334 ||||| || ||||| || || ||||| ||||||||| | ||| | || |||| || || Sbjct 40425289 GACACTTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGCG--TGCACGGTGGATGC 40425346 Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 | || | ||| ||| ||||||||||| ||| |||||| | | | |||| Sbjct 40425347 CTGGCTCTGTTCCCAACCACCCCAAGTACGACATCTCAGACATGACTTCTATTGCCAGGC 40425406 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | ||||||||||| | ||||| || ||| | || || || | || | || ||| Sbjct 40425407 TGGTCAAGTGGCAGGGTCATGAGGGAGACATCGATAAGGGTGCTCCTTATGCTCCCTGCT 40425466 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGA 14514 || |||||| | || |||||||| | ||| | || ||| |||| ||| || Sbjct 40425467 CTGGAATCCACCAGCGGGCTATCTGCATTTATGGGGCTGGGGACTTGAATTGGATGCTTC 40425526 Query 14515 GCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 | || |||||||| ||||||||||| ||| Sbjct 40425527 ACAACCATCACCTGTTGGCCAACAAGTTTGAC 40425558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658373196266240