Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1283 114 1e-20 seq183 96.9 3e-15 seq1197 86.0 5e-12 seq866 86.0 5e-12 seq401 86.0 5e-12 >seq1283 Length=83181570 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || ||||| || ||||| || Sbjct 38692347 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 38692406 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||| ||||||||||| || ||||| || Sbjct 38692407 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCCGACCAG 38692466 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 38692467 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 38692526 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||||||| | || |||| |||| || |||||||| Sbjct 38692527 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGGC 38692574 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||||||| | || || ||||| ||||| || Sbjct 38691891 ATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 38691950 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || |||||||| || ||||| || Sbjct 38691951 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAG 38692010 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 38692011 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAAC 38692070 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | ||| |||| ||||| || | ||||| || Sbjct 38692071 ATCCAGAAGGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGAGGTGGTAT 38692120 Score = 109 bits (120), Expect = 5e-19 Identities = 163/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || |||||||| || Sbjct 34932434 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 34932375 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||| ||||||||||| || ||| ||| Sbjct 34932374 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCAT-CCCCCCCATCGG 34932316 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 34932315 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAAC 34932256 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| ||||| || | ||||| || Sbjct 34932255 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTAT 34932206 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || |||||||| || Sbjct 38692119 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 38692178 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||||||||| || ||||| || Sbjct 38692179 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 38692238 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 38692239 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 38692298 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| ||||| || | ||||| || Sbjct 38692299 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTAT 38692348 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC--GT 27045 |||||||| || || ||||| || ||||||||| || || ||||||||||| || || Sbjct 34932662 ATGCAGATCTTCGTGAAAACCCTTACCGGCAAGATCATCACCCTTGAAGTGGAGCCCAGT 34932603 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| || || | ||||| ||||| ||||| |||||||||| || | || | Sbjct 34932602 GCCACT--ATCGAAAATGTCAAGGCCAAAATCCAAGATAAAGAAGGCAATCCCCGTGACC 34932545 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||| | | || | || ||||| || ||||||| | | |||| || |||| Sbjct 34932544 AGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCAGTCTTTCTGACTACA 34932485 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || ||||||||| | ||| |||| ||||| || | ||||| || Sbjct 34932484 ACATCCAGAAAGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGAGGTGGTAT 34932433 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || || |||||||| ||| | || || || || ||||| || Sbjct 34932207 ATGAAGATCTTCGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGAGCCCAGT 34932148 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC-CGATCA 27106 ||| | || || | || ||| || || || || |||||||||| || || |||||| Sbjct 34932147 GACACCATCGAAAATGTGAAAGCCAAGATCCAGGATGAAGAAGGCATCCCCCCGCGATCA 34932088 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| | |||||||| | || |||| || |||| Sbjct 34932087 GCAGAGGCTCATCTTTGCAGGCAAGAAGTTGGAAGATGGCCGCACTCTTTCTGACTACAG 34932028 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || |||||||||||| | || |||| |||| || |||||||| Sbjct 34932027 CATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGGC 34931979 >seq183 Length=202621043 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 26990 GCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGA 27049 |||||| ||||| || || || || |||||| | || |||||||| || | || || Sbjct 28069966 GCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACTCTTGACGTCAAGCCAAGTGA 28070025 Query 27050 CTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACA 27109 | | ||||||| |||||| |||||||||||| ||| ||| || ||||| || || || Sbjct 28070026 CACCATTGAGAATGTCAAAGCCAAAATTCAAGAC-AAGGAGGTATCCCACCTGACCAGCA 28070084 Query 27110 GCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACAT 27169 || | | ||| || |||||||| |||| || | || | || || | |||||| Sbjct 28070085 GCATCTGATACTTGCTGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTGCAACAT 28070144 Query 27170 TCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || ||||| ||| | || |||| |||| || |||||||| Sbjct 28070145 CCGGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGTAAGGTGGCAT 28070192 >seq1197 Length=81586097 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || || || || ||||| || Sbjct 51799402 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCG 51799343 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || || || || || || || ||||| || || || ||||| Sbjct 51799342 GATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 51799283 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || | || || ||||| Sbjct 51799282 CAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTACAAT 51799223 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | ||| | || ||| | | || ||||| Sbjct 51799222 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 51799176 >seq866 Length=116767853 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || ||||| || || || Sbjct 22523850 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 22523909 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||| |||||||||||||| || || || || || || | Sbjct 22523910 GACACCATTGAGAATGTCAGTGCGAAAATTCAAGACAAGGAGGGTATCCCCCCTGACAAG 22523969 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 |||||| | |||| ||| ||||||| |||| || Sbjct 22523970 CAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGA 22524004 >seq401 Length=166211670 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || || || || || || Sbjct 24856673 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 24856614 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | ||||| ||||| |||||||||||||| || ||||| |||| || || Sbjct 24856613 GACACCACTGAGAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACTTGACCAG 24856554 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 || ||| | |||| || |||||||| |||| || Sbjct 24856553 CAACGTCTGATATTTGCGGGCAAACAGCTGGAGGA 24856519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434676753900480