Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq183 203 3e-47 seq106 163 2e-35 seq1332 118 9e-22 >seq183 Length=202621043 Score = 203 bits (224), Expect = 3e-47 Identities = 375/545 (69%), Gaps = 9/545 (2%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || |||| |||||||| || || || || | ||||| Sbjct 96549362 CTAAACTGCATCGTCGCTGTGTCCCAAAACATGGGCATCGGCAAGAACGGGGACCTGCCC 96549303 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 |||| || || | |||||||| | |||| || | |||||| | ||||||| Sbjct 96549302 AGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACAACTTCTTCAGTA 96549243 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || |||| | | | Sbjct 96549242 GAGGGTAAACAGAATCTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 96549185 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| | |||||||| ||| | || || || || | Sbjct 96549184 AGAATCGACCTTTAAAGGATAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTC 96549125 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| |||| | |||| | ||| | || | || ||| | ||| Sbjct 96549124 CACAAGGAGCTCATTTTCTTGCCAGAAGTTTGGATGATGCCTTAAAACTTACTGAACGAC 96549065 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||| ||||||| || ||||| ||| ||| Sbjct 96549064 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGG 96549005 Query 2495 AGAGCATTACAAGATCT-TGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| | | | || || | | | || ||| | |||||||| |||| | ||| Sbjct 96549004 A-AGCCATGAATCACCTAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAGGACTTT 96548946 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| || | || |||||||| | | ||||| |||| || |||||| Sbjct 96548945 GAAAGTGACACGTTTTTTTCAGAAATTGACTTGGAGAAATATAAACTTCTGCCTGAATAC 96548886 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||| ||||| || || || | || || | ||||||||||| ||||| Sbjct 96548885 CCAGGTGTTCTCTCTGATGTCCAGGAGGGGAAACACATCAAGTACAAATTTGAAGTATAT 96548826 Query 2674 Gaaaa 2678 || || Sbjct 96548825 GAGAA 96548821 Score = 172 bits (190), Expect = 5e-38 Identities = 183/240 (76%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 ||| ||| || |||| ||||||| |||||||| ||| ||||| ||||||||||| Sbjct 115468662 AAATGCC-CAGGAAGCCCTCATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAA 115468720 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 |||||| ||| || || | |||| ||||| || | ||||| || || || || || | Sbjct 115468721 ACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGACAAGA 115468780 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 | ||||| || |||| ||||| |||||| |||| || ||||||||||| | || ||| Sbjct 115468781 TAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACCCTGG 115468840 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 | ||||||||||| |||| |||| | || || || ||||| | ||||||||| ||||||| Sbjct 115468841 AGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTTTGGGAAGATCTCAGGAA 115468900 >seq106 Length=111504155 Score = 163 bits (180), Expect = 2e-35 Identities = 357/525 (68%), Gaps = 21/525 (4%) Strand=Plus/Plus Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226 || |||||||| || || || || | ||||| ||||| || || | |||||||| | Sbjct 84539765 AACATGGGCATCGGCAAGAACGGGGACCTGCCCTGGCCACCGCTCAGGAATGAATTCAGG 84539824 Query 2227 CATTTTCAAAAAATGACATCTTCTTCCACTGACTTA---AAACAGAATGTTGTAATTATG 2283 |||| || | | |||| | | ||| | | | ||||||||| | || |||||| Sbjct 84539825 TATTTCCAGAGAGTGACCACAACCTCCTCAGTAGAAGGTAAACAGAATTTGGTGATTATG 84539884 Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGAACAACAGAATAA 2341 || || |||| ||||| || |||| | | ||| | | ||||| || || ||||| | Sbjct 84539885 GGTAGGAAGATCTGGTTCTCCATTCC--TGAGAAGAATCGACCTTTAAAGAATAGAATTA 84539942 Query 2342 ATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAA 2401 || | |||||||| ||| ||| || || || |||| || | ||| ||| |||||| || Sbjct 84539943 ATTTAGTTCTCAGGAGAGACCACAA-GAACCTCCACAAGGAGATCAATTTCTTGCAAGAA 84540001 Query 2402 GTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGA 2461 || | ||| | || || ||| | ||||| |||||||||| | | | || || | || Sbjct 84540002 GTCTGGATGATGC-CTTAAAACT-TAATA--ACCAGAATTAGCAAATAAAGTAGACATGA 84540057 Query 2462 TTTGGATAATTGGTGGAAGATCTGTCT-ATGAGGAGAGCATTACAAGATCTTGCAAACAG 2520 |||||||| ||||||| || ||| | | || |||| ||| | ||| ||| ||| Sbjct 84540058 TTTGGATAGTTGGTGGTAGTTCTATTTTATAAGGAATCCATGA----ATCACTCAAGCAG 84540113 Query 2521 ----ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGA 2576 | || ||| | |||||||| | || | |||||| |||| || | || ||||| Sbjct 84540114 TCTTAAACTATTTGTCACAAGGATCATACAGGACTTTGAAAGTGACACGTTTTTTCCAGA 84540173 Query 2577 AATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCA 2636 |||| || | ||||| ||| || | |||| |||| |||| || || || || Sbjct 84540174 AATTGATTTGGAGAAATATAAATTTCTGCCAGAATACCCAGATGTTTTCTTTGATGTCCA 84540233 Query 2637 AGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 || || || || |||| ||||||||||| || |||| || || Sbjct 84540234 GGAGGAGAAAGGCATTAAGTACAAATTTGAAGTACATGAGAAGAA 84540278 >seq1332 Length=78221452 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 60796775 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 60796716 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 60796715 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 60796656 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 60796655 ATCGCCCTGTGGATGACTGA 60796636 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || ||||||||| | || ||||| Sbjct 17408364 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 17408423 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || ||||||||| | ||||||||||||| ||||| || ||||| | ||| | Sbjct 17408424 ACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 17408483 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || ||||||||||| |||| Sbjct 17408484 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 17408524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414252268721236