Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq793 89.7 4e-13 seq183 82.4 7e-11 >seq793 Length=147911612 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/145 (75%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || ||| |||||| || || || || || | Sbjct 125654447 GCCACCTCGCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGA 125654388 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || |||||||||||||||| ||| |||||||||||||| ||||| Sbjct 125654387 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGG 125654328 Query 39176 GCACGCTCTCTTTGTCCATGATTTT 39200 | | || ||| |||||| ||| ||| Sbjct 125654327 G-ATGCCCTCCTTGTCC-TGAATTT 125654305 >seq183 Length=202621043 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/219 (69%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| |||||| | || || | || | || ||||| | Sbjct 28070178 GCGCAGCACCAGGTGCAGGGTGGACTCTTTCCGGATGTTGCAGTCTGAGAGAGTTCGGCC 28070119 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 || || ||||||||||| |||| ||| ||| |||||||||| |||||| | | ||| | Sbjct 28070118 ATCCTCCAGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGG-ATAC-CTCCT 28070061 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||||| ||||| || | | || || || | || ||||| | |||| Sbjct 28070060 TGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTTGGCTTGACGTCAAGAGTGA 28070001 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | | || ||||| || || || |||||||| ||| ||| Sbjct 28070000 TGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCGTCT 28069962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429312905617937