Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1588 304 1e-77 seq1481 304 1e-77 seq1 143 2e-29 seq1345 111 1e-19 seq106 98.7 8e-16 seq793 89.7 4e-13 seq183 84.2 2e-11 >seq1588 Length=553333 Score = 304 bits (336), Expect = 1e-77 Identities = 528/758 (70%), Gaps = 11/758 (1%) Strand=Plus/Minus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||||| || || || || |||| || ||| || || ||||| | | Sbjct 230430 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 230371 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | || ||||||||||| || || | | ||||| || Sbjct 230370 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 230311 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 | | | ||| || | |||||||| | ||| | || | |||| || || |||||||| Sbjct 230310 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 230251 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 ||| || ||||| || ||||||||||| ||||| || |||||||| | || ||||| Sbjct 230250 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 230191 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 |||| || || ||||| ||||| | ||||| || ||||||||||| ||||||||||| Sbjct 230190 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 230131 Query 4679 GGCGGCAAACGCTACTAATCG-GGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737 || || || ||||| | || ||| | ||| ||||||| |||||| | Sbjct 230130 TGCAGCGAAGGCTACAACACGTTCACCATAGGTAGC-CTCTTTGTCCCCAATCCAGCACA 230072 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT--AAATAATTT 4795 | ||||| | || || ||||| || || || || || | || || || | | || || Sbjct 230071 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAGAAATT 230013 Query 4796 ACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 ||||| | |||| |||| || |||||||| || || || |||||||||||||||| Sbjct 230012 CCTTTTCT---TTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 229956 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 |||| ||||| || ||||| || || || || || || | |||||||| | |||||| Sbjct 229955 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 229896 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | ||||| || || || ||||| |||||||| || ||||| |||||||| || Sbjct 229895 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 229836 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 ||| |||||| |||||||| || || || ||||| | || |||||| | | | Sbjct 229835 CCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCAGTGCCGAATGT 229776 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 | || | | || || || || ||||| || || || ||||| || || ||||| Sbjct 229775 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCT 229716 Query 5095 ACCAAATATCAGGATACT-GAATCGGAAGTATGACAAA 5131 ||| |||||| | |||| || ||||| |||||||| Sbjct 229715 GCCAGATATCATGGTACTCGACGGGGAAG-ATGACAAA 229679 >seq1481 Length=155549662 Score = 304 bits (336), Expect = 1e-77 Identities = 528/758 (70%), Gaps = 11/758 (1%) Strand=Plus/Plus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||||| || || || || |||| || ||| || || ||||| | | Sbjct 44508503 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44508562 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | || ||||||||||| || || | | ||||| || Sbjct 44508563 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44508622 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 | | | ||| || | |||||||| | ||| | || | |||| || || |||||||| Sbjct 44508623 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44508682 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 ||| || ||||| || ||||||||||| ||||| || |||||||| | || ||||| Sbjct 44508683 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 44508742 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 |||| || || ||||| ||||| | ||||| || ||||||||||| ||||||||||| Sbjct 44508743 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 44508802 Query 4679 GGCGGCAAACGCTACTAATCG-GGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737 || || || ||||| | || ||| | ||| ||||||| |||||| | Sbjct 44508803 TGCAGCGAAGGCTACAACACGTTCACCATAGGTAGC-CTCTTTGTCCCCAATCCAGCACA 44508861 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT--AAATAATTT 4795 | ||||| | || || ||||| || || || || || | || || || | | || || Sbjct 44508862 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAGAAATT 44508920 Query 4796 ACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 ||||| | |||| |||| || |||||||| || || || |||||||||||||||| Sbjct 44508921 CCTTTTCT---TTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44508977 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 |||| ||||| || ||||| || || || || || || | |||||||| | |||||| Sbjct 44508978 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44509037 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | ||||| || || || ||||| |||||||| || ||||| |||||||| || Sbjct 44509038 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 44509097 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 ||| |||||| |||||||| || || || ||||| | || |||||| | | | Sbjct 44509098 CCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCAGTGCCGAATGT 44509157 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 | || | | || || || || ||||| || || || ||||| || || ||||| Sbjct 44509158 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCT 44509217 Query 5095 ACCAAATATCAGGATACT-GAATCGGAAGTATGACAAA 5131 ||| |||||| | |||| || ||||| |||||||| Sbjct 44509218 GCCAGATATCATGGTACTCGACGGGGAAG-ATGACAAA 44509254 Score = 156 bits (172), Expect = 4e-33 Identities = 385/574 (67%), Gaps = 25/574 (4%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || | Sbjct 144080947 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144080888 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 144080887 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144080828 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT-GTCTTT 4726 ||| ||| || |||||| ||| | || | || || | ||| | |||||| Sbjct 144080827 GTGCTTTCCACCAAGGCAAAGGCTGC--AT-GCAACACGTTCTCCATGGGTAACGTCTTT 144080771 Query 4727 ------AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 |||||| || |||| || || ||||| || || || || || | || Sbjct 144080770 GTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAAT 144080712 Query 4781 AGCGTTAAATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTA 4836 || | || | ||| |||| || || |||| ||||| ||||| || || | Sbjct 144080711 GGCACTGAAGAGAAATTCCCTTTCTT----TGTTATCTTTAATAT--GTGTCAATAAGGA 144080658 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 | ||| ||||||||||| || |||||||||||||| || || || || ||||| | Sbjct 144080657 GATTATTTATTTCAGAATGCATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGG 144080598 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 |||||| | ||||||| | | |||| ||| || |||||||| | || ||| || | Sbjct 144080597 TTTCTGTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCAT 144080538 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTT 5016 ||| |||||||| || |||| || ||| |||||||| || || |||||||| || Sbjct 144080537 CACATGCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGG 144080478 Query 5017 TTTTCCAGTGGGGCAAA--TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074 || ||||| | |||| || || | | || || || | | |||| || || | Sbjct 144080477 CTTCCCAGT--GCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAAC 144080420 Query 5075 TTCCGCTTTTTTGTACATAGACCAAATATCAGGA 5108 || |||| || ||||| |||||||||| || Sbjct 144080419 CTCTACTTTCTTTTACATTTTCCAAATATCATGA 144080386 >seq1 Length=228573443 Score = 143 bits (158), Expect = 2e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| || |||||||| || || || |||||||||||||||||| | ||||| || ||| Sbjct 139565401 TCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCA 139565460 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || || || | || || || | |||||||| | |||||||| | | ||||| || Sbjct 139565461 ATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCC 139565520 Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || |||||||| |||||||| || ||||| |||||||| || |||| |||| | |||||| Sbjct 139565521 ACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATA 139565580 Query 4992 AA 4993 || Sbjct 139565581 AA 139565582 >seq1345 Length=61309027 Score = 111 bits (122), Expect = 1e-19 Identities = 210/303 (69%), Gaps = 7/303 (2%) Strand=Plus/Plus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || ||||| || ||||| | | | ||||| || || || ||| || ||||| Sbjct 54758858 GCCCTTGTGAAAACGGACATTCAGACAGCGCTTCCTTCTGGATGTTATGGA-GAGTAGCT 54758916 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || || ||||| ||||| | ||||||||| | || || || || ||||| | |||| | Sbjct 54758917 CCAAGGTCTGGCTTGGCTGCAAAACACTTTGTTGATGTAGGAGCTGGTGTCACAGATGAA 54758976 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGT 31942 || ||||||||||| ||||| |||| | ||||||||| | |||||| | | ||| Sbjct 54758977 GATTATAGAGGAAATGTTGGTGTTGTACTCTTTAATTTTTGCAAAGAAAAGT-TTGAAGT 54759035 Query 31943 ATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAAT-GCCCCAAAT 32001 |||||| || ||| | | || || || ||||| ||| || | || |||| Sbjct 54759036 -CAAAAAAAGGTGATCGAATTGCACAGCTCATTTGTGAACGGATTTTTTTATCCAGAAAT 54759094 Query 32002 AGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGG 32061 ||||| || | | | | ||| ||| ||||| || | ||| ||||| |||||||| Sbjct 54759095 AGAAGAAGTTCAAGCTTTGGATGACACCAAAAGGGGTTCAGGAGGTTTTGGCTCTACCGG 54759154 Query 32062 AAA 32064 ||| Sbjct 54759155 AAA 54759157 >seq106 Length=111504155 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| |||||||| || | || ||||| | |||| || || Sbjct 10258842 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10258783 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 10258782 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10258723 Query 4692 AC 4693 || Sbjct 10258722 AC 10258721 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 10256467 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 10256408 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 10256407 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 10256350 >seq793 Length=147911612 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 104147741 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 104147797 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| || || | ||||| || |||||||| || | ||| || | Sbjct 104147798 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 104147857 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 104147858 ATAAGTCGAC 104147867 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 104130026 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 104130085 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 104130086 ATAAAATCAAAAGGATT 104130102 >seq183 Length=202621043 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/156 (72%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 34294 AAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTCT 34350 |||| ||||| || ||| | ||||||||| || |||||||| ||| ||||| || | Sbjct 176254411 AAAGAAAACACAAAGAACGACAAACAAATGGTCCAATATATTTACAAATACACAAGTTAT 176254352 Query 34351 TACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCT 34410 | | ||| || ||||||||||||||||||||| || || ||| |||| || Sbjct 176254351 CCTG---ACCCTATATTGTTGATGAAAAGCGCTAGAAATAGTTGTTGGTCTAAAGATGCA 176254295 Query 34411 GAGTACGGTCTTTACTCAGTATATCAAGGAGGAATA 34446 || || || || || || | |||||||| |||||| Sbjct 176254294 GAATATGGACTCTATTCCATCTATCAAGGGGGAATA 176254259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426818257756517