Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1 174 2e-38 seq866 132 7e-26 >seq1 Length=228573443 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| |||| |||||| ||||| || ||||| || |||||||| || Sbjct 165348242 GTCTGGAACAACTGCTCATCACCCCATTCAGGATGCTCCTGTTTAAGCACATCGCATACT 165348301 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 165348302 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 165348361 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 ||| || || ||||| | || | | || || |||| ||||| |||||||| | Sbjct 165348362 AACTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 165348421 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 165348422 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 165348470 Score = 168 bits (186), Expect = 1e-36 Identities = 231/323 (72%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 8264 TTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTA 8323 |||| |||||| ||| ||||| | ||| | | || ||||| ||||| ||||| | Sbjct 165346202 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 165346261 Query 8324 CAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAG 8383 |||| ||||||||||| | || | |||| ||| || ||||| ||||| || || Sbjct 165346262 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 165346321 Query 8384 GTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAG 8443 ||||| ||||||||||| | || || || || || || |||| || ||||| | |||| Sbjct 165346322 GTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 165346381 Query 8444 AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8503 || || || || | || | ||| ||||||| |||||||| | || || |||||||| Sbjct 165346382 AATGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGCCGAGGCTTTTCT 165346441 Query 8504 ACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCG 8563 |||| | | | |||||||||||||| |||| ||| || || || || | || Sbjct 165346442 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCT 165346501 Query 8564 GCAGCGATCTCCTTTTCTCCTGT 8586 |||| || |||||||||||||| Sbjct 165346502 GCAGACATTTCCTTTTCTCCTGT 165346524 Score = 122 bits (134), Expect = 1e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||| || || ||||| || || |||||| ||| ||| | || Sbjct 165349392 TCTTACCCCATGGCCCAGCCCGTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 165349451 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| |||||||| || ||| |||| || |||||||| | ||| | |||||||||||| Sbjct 165349452 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGAGCCCTGGGGATC 165349511 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | ||||| ||||||||||| | | ||| || |||| Sbjct 165349512 AGGGATGAACTTTCTTCTTAGAAGTAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 165349571 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 ||||||||| || ||||| Sbjct 165349572 CTTTTTACCTGAAAAATGAGAA 165349593 Score = 104 bits (114), Expect = 3e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 ||||||||||| || | ||||| || || || | ||| || ||||| || || | Sbjct 165350005 TCACCTTTGACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTAGTA 165350064 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 ||||||||||| || ||||| |||||||||||| ||| | ||||| || ||||| | Sbjct 165350065 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAAGTT 165350124 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || ||||||||||||| ||||| |||| Sbjct 165350125 GGTGGACTGTCAATCAAATGTGATCTGGCTGA 165350156 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| | ||||| ||||| || | ||||||||| || || | Sbjct 165347648 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 165347707 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | ||| || |||||||||| || ||| | |||| || || | || ||| | Sbjct 165347708 AGTAATATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTATTTCTGGTCATGAATTT 165347765 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| | || |||| || | |||||||||||| | ||||||| || | | |||| Sbjct 165347766 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAATTCAGCAGCAATAC 165347825 Query 9122 GATTTTGGTACTGGAA 9137 ||||||| |||||||| Sbjct 165347826 GATTTTGATACTGGAA 165347841 >seq866 Length=116767853 Score = 132 bits (146), Expect = 7e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||||||||| || ||||| || ||||| || ||||| |||||||||||| |||| | Sbjct 100454574 TCTTGACGATGTTAAAGCCCACCTCGCCGCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 100454515 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || | Sbjct 100454514 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 100454455 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||| | ||| ||| || |||||| | | | ||||| ||| | ||||| Sbjct 100454454 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGTCCGGGGTAGAACTCCA 100454395 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | |||||| || | || | || || || |||||||| |||||| Sbjct 100454394 ACGCATCAATGTCTCCATACAATTCCTCCAACTCTGCTGCCATCTCCTTCTCTCCT 100454339 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || || |||||||| || ||||| || | ||| || || Sbjct 100445942 TCACCTATGAGGATGAGGCGGGTCGTCTGGAAAAGCTGCTCATCGCCCCAGGTGGGGTGC 100445883 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||||| ||||| |||| | Sbjct 100445882 TCAGCCTTCAGCAGGTCACACACACGGTTGTGCTCACGTAGCCAGAGCGTGGCATACAGC 100445823 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||||||||| | ||| ||||| |||| || || ||||||| | | | | |||| Sbjct 100445822 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA---TCTGGCTCTGGGGC 100445766 Query 9412 -----ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466 | |||| || ||| ||| ||| | | |||| |||||||| || |||| Sbjct 100445765 GGGATGCCTCGG--GGGTAGTGCATCAACACAGGCGCCTCTTCTACCGAGGGCGGGTACA 100445708 Query 9467 TTTCACCGTCAATCATCTG 9485 |||| ||||| | || ||| Sbjct 100445707 TTTCTCCGTCCAGCACCTG 100445689 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704 || || |||||||| |||| | || |||||| | || || || |||| | ||| Sbjct 100443755 GTACTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 100443698 Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764 | || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| |||| Sbjct 100443697 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 100443638 Query 9765 GATCGGGAGTGAAGGTCCTCC 9785 | || || |||| |||||| Sbjct 100443637 GGTCAGGTATGAACTTCCTCC 100443617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716478494288960