Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1283 105 6e-18 seq1113 86.0 6e-12 seq148 86.0 6e-12 >seq1283 Length=83181570 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||||||||| ||||| ||||| || || ||||| Sbjct 38692336 AGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 38692277 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | || | || || Sbjct 38692276 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCT 38692217 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | ||||| || | |||||| |||| || Sbjct 38692216 TTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 38692157 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 38692156 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 38692119 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||||| || ||||||||| ||||| ||||| || || || || Sbjct 38692108 AGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 38692049 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | || | || ||| Sbjct 38692048 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCC 38691989 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | ||||| || | ||||||||| | || Sbjct 38691988 TTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTG 38691929 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || || || ||||| |||||||| || Sbjct 38691928 ATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 38691888 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || || Sbjct 38692555 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 38692496 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| ||||| | || | || || || || | Sbjct 38692495 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCTTGG 38692436 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | ||||||||||| || || || || Sbjct 38692435 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTG 38692376 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| ||||| |||||||| Sbjct 38692375 CCGGTCAGGGTCTTCACGAAGATCTGCAT 38692347 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||| | ||||| || || ||||| | || || Sbjct 34931998 ACCAGGTGCAGGGTCGACTCCTTCTGGATGCTGTAGTCAGAAAGAGTGCGGCCATCTTCC 34932057 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCAT 41772 | || |||||| || || || || | ||| || || || ||| | || || | ||| Sbjct 34932058 AACTTCTTGCCTGCAAAGATGAGCCTCTGCTGATCGCGGGGGGATGCCTTCTTCATCCTG 34932117 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||| || |||| || | | ||||| || | ||||||||||| || || || | Sbjct 34932118 GATCTTG-GCTTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 34932176 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || ||||| ||||| ||||| |||| ||| Sbjct 34932177 TTCCGGTCAGGGTCTTCACGAAGATCTTCAT 34932207 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||||| || ||| ||||| ||||| ||||| || || |||| Sbjct 34932445 AGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCGG 34932504 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| |||| || || Sbjct 34932505 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCACGGGGATTGCCTTCT 34932564 Query 41765 TTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCG 41822 || || |||||| ||| || || | |||| | || | |||||| || | | Sbjct 34932565 TTATCTTGGATTTTGGCCTTGACATTTTCG--ATAGTGGCACTGGGCTCCACTTCAAGGG 34932622 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || | || || || || || || ||||| |||||||| || Sbjct 34932623 TGATGATCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 34932665 >seq1113 Length=91965084 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| ||| ||| ||||| ||||||||||| || || || || | || || Sbjct 5116753 CACCACCTGCAGGGTGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTACGGCCATCCTC 5116694 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 | ||| ||| | |||||||| |||| ||||| | || | || |||||||| | | Sbjct 5116693 CAACTGTTTGTTCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGT-CGT 5116635 Query 41773 GATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | | || |||| || ||| ||||| || | || ||||| | || || |||| Sbjct 5116634 GGATCTTGGCTTTGACATTTTCACTGGTGTCACTTGGCTGGACCTCAAGGGTGATGGTTT 5116575 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || |||||||| | |||||||| Sbjct 5116574 TGCCTGTGAGGGTCTTTACAGAGATCTGCAT 5116544 >seq148 Length=133216015 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||||||||| || | ||||| || || || Sbjct 25987013 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAGTCAGAATGAGTGCGGTCATCTTCC 25987072 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | ||||||| | || || || || | ||| ||||||| || || || ||||| ||| | Sbjct 25987073 ACCTGCTTGACTGCAAAGATGAGCCTCTGCTGGTCCGGGGTAATGCCTTCCTTATCCTGG 25987132 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | ||||| || | | || || || Sbjct 25987133 ATCTTGGCCTTCACATTTTTGATGGTGTCCCTGGGTTCCACTTCAAGGGCAATGGTCTTG 25987192 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || ||||| ||||| |||||||| || Sbjct 25987193 CTGGTAAGGGTCTTCACGAAGATCTGCATTTT 25987224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462047138118800