Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papio_20anubis_20[genbank_20GCA_5F000264685.2_202017-04-20] 63,234 sequences; 2,959,356,508 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq21 248 7e-61 seq8 102 7e-17 seq13 82.4 7e-11 >seq21 Length=143691637 Score = 248 bits (274), Expect = 7e-61 Identities = 573/855 (67%), Gaps = 30/855 (4%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || | ||||| || ||||| ||||| || |||| | |||||||| ||| Sbjct 41472683 TGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTCC 41472737 Query 12923 ATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| || || || || | || | || || || | || | ||| | | Sbjct 41472738 ATAAAGTCAAATGGGTTCTCTACTCTGAAAACC----TTGCTAAAACCCAGTTCCGGCAT 41472793 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 |||||| || ||| |||| ||||| || ||||||| | || ||||| || || | Sbjct 41472794 G--TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAG 41472851 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 || ||||||| || || || | || | | |||||| ||| || | ||||| | | Sbjct 41472852 CTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCAAACAGCATTGATAATTCT 41472911 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 ||||||||| | ||| ||||| | | || || || ||||||| || ||||| Sbjct 41472912 TTCTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAGGCAAA 41472971 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||||||||| || || ||||||| ||| || || || || ||||| || || || ||||| Sbjct 41472972 ATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCAT 41473031 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 || |||||||| || | ||| ||||| | ||||| |||| | |||| || ||||| Sbjct 41473032 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACC---AGAAAAGATGCCTTC 41473088 Query 13279 AACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTA-CTATTTTTACTCTCTATCCAC 13336 |||| ||||| ||| |||| | ||| ||||| ||| || ||| | | | ||||| Sbjct 41473089 CGCTGCAGCAAAGACTA-CAACACGTTCCCCATAGGTAGCTGCTTTGTC-CCCAATCCAG 41473146 Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 | |||||| | ||| || | || || || ||| |||| || || || || | Sbjct 41473147 TGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGA 41473206 Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAA 13456 | | |||| || ||| || ||||| || || | || ||||||||| | ||| Sbjct 41473207 AATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAA 41473266 Query 13457 TGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACT 13516 || || |||||||| || |||||||| ||| | ||||| | || |||| ||||||||| Sbjct 41473267 TGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACT 41473326 Query 13517 TCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaa 13576 || | ||||| || | |||||| | || ||||| || ||||| || |||| ||| Sbjct 41473327 TCTTGGCTAAATCACTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTACAAAGAAA 41473386 Query 13577 GCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTGG 13632 | || | || ||||| | | | || | ||| | | | ||| | Sbjct 41473387 ACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGA----TTCCCAGTGCCA 41473442 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 || || || || | || |||||||| ||||||| || ||||| | ||||||||||| Sbjct 41473443 AATGTCCTTGGACAGGTCCACCTCCTCCGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATA 41473502 Query 13693 CATCATCCATATATC 13707 |||| ||| ||||| Sbjct 41473503 CATCTGCCAGATATC 41473517 >seq8 Length=140346614 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 97934732 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 97934791 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || |||||||| || || ||||| | Sbjct 97934792 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 97934851 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 97934852 CCACCACTCTTTCCCC 97934867 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 97923167 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 97923226 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 97923227 ATAAAATCAAAAGGATTTT 97923245 >seq13 Length=104990034 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 9461204 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 9461146 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| | ||||||||| Sbjct 9461145 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 9461107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430650257218068