Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papio_20anubis_20[genbank_20GCA_5F000264685.2_202017-04-20] 63,234 sequences; 2,959,356,508 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1 183 4e-41 seq15 129 8e-25 >seq1 Length=217458864 Score = 183 bits (202), Expect = 4e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || |||| |||||| ||||| || |||| || |||||||||||| Sbjct 174478787 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 174478728 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||| | ||||| || || || |||||||| |||||||||||||| ||||| Sbjct 174478727 CTGTTGTGTTCTCGCAGCCAAATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 174478668 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| || || || |||| ||||| |||||||| | Sbjct 174478667 ACCTCCTGCCCCACAGCAAATCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 174478608 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 174478607 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 174478559 Score = 168 bits (186), Expect = 9e-37 Identities = 231/323 (72%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 8654 TTGAGGAGCTCCTTATTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTA 8713 |||| |||||| || ||||| | ||| | | || ||||| || || ||||| | Sbjct 174480842 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 174480783 Query 8714 CAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAG 8773 |||| |||||||| || | ||| | |||| ||| ||| ||||| ||||| || || Sbjct 174480782 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 174480723 Query 8774 GTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAA 8833 ||||| || |||||||| | || || || || || || |||| || ||||| | ||| Sbjct 174480722 GTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 174480663 Query 8834 AACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8893 ||||| || || | || | ||| ||||||| |||||||| | ||||| |||||||| Sbjct 174480662 AACGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCT 174480603 Query 8894 ACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCG 8953 |||| | | | |||| ||||||||| |||||||| || || || || | || Sbjct 174480602 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCT 174480543 Query 8954 GCAGCGATTTCCTTTTCTCCTGT 8976 |||| ||||||||||||||||| Sbjct 174480542 GCAGACATTTCCTTTTCTCCTGT 174480520 Score = 136 bits (150), Expect = 6e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 174477633 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 174477574 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| |||||||| || ||| |||| || |||||||| | ||| |||||||||||||| Sbjct 174477573 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 174477514 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| | || | |||||| ||||||||||| Sbjct 174477513 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 174477476 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 10285 AGTCACCTTTGAC-CCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 10343 |||||||||| || |||||| ||||| || || || | ||| || ||||| || || Sbjct 174477024 AGTCACCTTTCACACCCAAG-GGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTG 174476966 Query 10344 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAG 10403 | ||||||||||| || ||||| |||||||||||| ||| | ||||| | ||||| Sbjct 174476965 GTATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAA 174476906 Query 10404 ATGGGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 | || || ||||||||||||| ||||| ||||| Sbjct 174476905 GTTGGTGGACTGTCAATCAAATGTGATCTGGCTGAA 174476870 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | ||||||||| || || | Sbjct 174479380 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 174479321 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | ||| || |||||||| | || ||| || ||| || || | || ||| | Sbjct 174479320 AGTAATATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTATTTCTGGTCATGAATTT 174479263 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| || |||| || | |||||||||||| | |||||||||| | | |||| Sbjct 174479262 GAAAGTTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAACTCAGCAGCAATAC 174479203 Query 9500 GATTTTGGTACTGGAA 9515 |||||||||||||||| Sbjct 174479202 GATTTTGGTACTGGAA 174479187 >seq15 Length=108049171 Score = 129 bits (142), Expect = 8e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||||||||| ||| |||| || || || || ||||| || |||||||| |||| | Sbjct 12436690 TCTTGACGATGTTAAAGCCCATCTCGCCACCAAAAGTGCTCGGCTTCCAGTACTCCGGAG 12436749 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || | Sbjct 12436750 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 12436809 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||| | ||| ||| || |||||| | | | || | ||| ||||||| Sbjct 12436810 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGCCCAGGGTAGAACTCCA 12436869 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || ||||||||||| || || | || || || || ||||| |||||| Sbjct 12436870 ACGCGTCAATGTCTCCGTACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCT 12436925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707964764284960