Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papio_20anubis_20[genbank_20GCA_5F000264685.2_202017-04-20] 63,234 sequences; 2,959,356,508 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value SEQ44210 100 3e-16 seq12 95.1 1e-14 seq19 86.0 8e-12 seq4 86.0 8e-12 >SEQ44210 Length=79069 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || ||| | || |||||||| | || ||| ||| Sbjct 9520 ACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGTTGTGCAATTCGATCACCC 9579 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || || | ||||||||| | | | ||| | |||||| || Sbjct 9580 TTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTA 9639 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || |||||||| |||| ||||| ||||| || || Sbjct 9640 TAATCTTCATCTATGACACCAGCTCCTACATCAGTAAAGTGATTTGCAGCCAAGCCTGAC 9699 Query 22815 CTAGGAGATATTCTTCCATA 22834 | |||| || ||||||||| Sbjct 9700 CCTGGAGCTACTCTTCCATA 9719 >seq12 Length=128289686 Score = 95.1 bits (104), Expect = 1e-14 Identities = 235/357 (66%), Gaps = 15/357 (4%) Strand=Plus/Minus Query 22580 GGATCCAAAACCA---GAACCCCCTCTTTCTGTGATACTCAATTCTTCCACAGTCTTTAC 22636 ||| ||||||||| ||||||| |||| ||| || |||| || | || Sbjct 60587022 GGAACCAAAACCACCTGAACCCC---TTTCGGTG---------TCATCCAAAGCTTGAAC 60586975 Query 22637 TTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCCTT 22696 |||| ||||||||||| || ||| | || || ||||| | || ||| ||||| Sbjct 60586974 TTCTTCTATTTCTGGATAAAAAATGCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTT 60586915 Query 22697 ATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTGTA 22756 || || | ||| || || | ||||||||| | | | ||| | |||||| || || Sbjct 60586914 TTTGACTTGAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATA 60586855 Query 22757 ATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGATCT 22816 |||| || ||| ||||| || |||||||| ||||| || || ||||| || || | Sbjct 60586854 ATCTTCATTTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCG 60586795 Query 22817 AGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACTAA 22876 |||| || ||||||||| | || || | |||| ||| || || | || | Sbjct 60586794 TGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCTATCTGAATGTCCGTTTTCACAAG 60586735 Query 22877 TTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933 ||| |||||||| |||| ||||| ||| || || || || || || || || Sbjct 60586734 AGCTTTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGC 60586678 >seq19 Length=51387494 Score = 86.0 bits (94), Expect = 8e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || |||| | || || ||||| | || ||| | Sbjct 45564509 ACTTCTTCTATTTCTGGATAGAACATCCGTTCACAAATGAGCTGTGCAATTCGATC-ACG 45564451 Query 22695 TTATTT-ACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCT 22753 |||||| || | ||| || || | ||||||||| | | | ||| |||||||| || Sbjct 45564450 TTATTTGACTTCAAACTTTTCTTTGCCAAAATTAAAGACTACAACACCAATATTTCCTCT 45564391 Query 22754 GTAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGA 22813 |||||| |||| | ||||| || |||||||| | ||| || || ||||| || || Sbjct 45564390 ATAATCTTCATCTGTGACACCAGCTCCTACATCTACAAAGTGTTTTGCAGCCAAGCCAGA 45564331 Query 22814 TCTAGGAGATATTCTTCCATA 22834 | |||| || ||||||||| Sbjct 45564330 CCGTGGAGCTACTCTTCCATA 45564310 >seq4 Length=166074386 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 32674 TGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGA 32733 |||||| || ||| | |||||||| | || ||| | || || | || || || ||| Sbjct 75806345 TGTGGTGGTACTTTGTTTCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATTCTGA 75806286 Query 32734 GAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTT 32793 |||||||| ||||| ||| || | || || || || || | ||| |||||||| | Sbjct 75806285 GAAAGAAAAACAACCAGGTTTCTTTCCTTCATGTGTATCATCACTGTACGATGTTTACCT 75806226 Query 32794 TAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 | | ||||| || ||||| ||| ||||||||||||| Sbjct 75806225 TGTGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 75806189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602704030816160