Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= AC_000017.1 Length=36001 Score E Sequences producing significant alignments: (Bits) Value seq25851 127 5e-25 >seq25851 Length=153482349 Score = 127 bits (140), Expect = 5e-25 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 11976 GAAGGTGCTTACCTTGAGCGACGACCTGGGCGTTTATCGCAACGAGCGCATCCACAAGGC 12035 ||| | | || || ||| ||| ||| ||||||||| | ||||||||||| | | Sbjct 122896375 GAATGCGGTTTCCATGAACGATTACCCTTGCGTTTATCTGAT-GAGCGCATCCATTAA-C 122896318 Query 12036 CGTGAGCGTGAGCCGGCGGCGCGAGCTCAGCGACCGCGAGCTGATGCACAGCCTGCAAAG 12095 | ||| ||||||||| | | |||||| |||||||||||||||||| |||||| | Sbjct 122896317 CATGAT-GTGAGCCGGGGACTGAAGCTCATAAACCGCGAGCTGATGCACACCCTGCATGG 122896259 Query 12096 GGCCCTGGCTGGCACGGGCAGCGGCGATAGAGAGGCCGAGTCCTACTTTGACGCGGGCGC 12155 | |||| ||||| || |||||| ||| | ||| ||||| ||| ||||| || || Sbjct 122896258 GTGCCTGTCTGGCGGGGACAGCGGAAATATACAGGTCGAGTTCTAGCTTGACACGTCTGC 122896199 Query 12156 TGACCTGCGCTGGGCCCCAAGCCGACGCGCCCTGGAGGCAGCTGGGGCCGGAC 12208 ||| |||||||| ||||| || |||| || || ||||| ||||||||| || Sbjct 122896198 TGATTGGCGCTGGGGCCCAAACCTACGCACCATGTAGGCA-CTGGGGCCGAAC 122896147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114997506638210