Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq51122 273 2e-68 seq5641 102 8e-17 >seq51122 Length=156195299 Score = 273 bits (302), Expect = 2e-68 Identities = 600/886 (68%), Gaps = 21/886 (2%) Strand=Plus/Plus Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720 || || ||||| || || || |||| || | | || || |||||||| || | Sbjct 44959176 ACCACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC----- 44959230 Query 16721 AGAGATATATTCTCCATGAAATCAAA-AGGATTAGTA-GCTGAAAATATTTTAGAGTACC 16778 || || ||||||||||| || ||||| || | || | ||||| || | | | Sbjct 44959231 AGTGAAATATTCTCCATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA--AAC 44959288 Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838 ||||||| || | ||| || || ||||| || || ||||| ||||| |||| | Sbjct 44959289 CCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAAT 44959348 Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898 |||| || || || || || | || || || | ||| || ||||| ||| | Sbjct 44959349 TCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAG 44959408 Query 16899 C-TTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 | || | | || | || | |||| ||||| || | | | ||| || ||||| ||| Sbjct 44959409 CATTGATAATTATTTCTCTC-ACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAAC 44959467 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 |||| || || ||||| || ||||| ||||| |||||||| |||||||| || ||||| Sbjct 44959468 ATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 44959527 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 || | || |||||| |||||||||||| | ||| ||||||| || || || || ||| Sbjct 44959528 GTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAA 44959587 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 ||||| | || || || | || || || | | ||||| | || || || |||||| Sbjct 44959588 AAGAAGACGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTG 44959647 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | | |||||| | |||| || || || | ||| | ||| ||||||||| ||| Sbjct 44959648 TCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATG 44959707 Query 17198 GCCTT--AAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGG 17254 || || | |||| ||| |||| || | || || | || || || || || || || Sbjct 44959708 GCATTGAAGATAAATTCCCTTT---CTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGA 44959764 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 || |||||||| || |||||||| |||||||| || || || || || || || |||||| Sbjct 44959765 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCT 44959824 Query 17315 TCCGCTATTTGAAC--TTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 || | || ||||| || || || ||||| ||| | | |||||| || || ||||| | Sbjct 44959825 TCTGTAATCTGAACTATTTGAC-TA-AATCGCTCCACCAAATTTTCATTTACTATGCCAT 44959882 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | || || || || || ||| | ||| || |||| | | || || || | || Sbjct 44959883 CACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGG 44959942 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| | | || ||||| | ||||| ||||| | |||||| || |||| Sbjct 44959943 ATTCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCT 44960002 Query 17493 CTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | ||||| |||||||| | ||| ||||||| ||| | |||||||| Sbjct 44960003 CCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAA 44960048 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || | || ||||| ||||| || ||||| |||||||| || ||||||| Sbjct 144142953 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 144142894 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||| ||||||| | ||| |||||| || || || ||||||| Sbjct 144142893 TGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAA 144142834 Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 |||| ||| || || ||||| || | ||||| | | || ||||||||| Sbjct 144142833 AGAAGGTACTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGT 144142774 Query 17139 TACGAATCCA 17148 | | |||||| Sbjct 144142773 TCCCAATCCA 144142764 >seq5641 Length=113028656 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| ||||||||||| | || |||||| ||||||||||| Sbjct 102562830 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 102562889 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 102562890 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 102562949 Query 17106 C 17106 | Sbjct 102562950 C 102562950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517147510393800