Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq51122 259 5e-64 seq25851 102 8e-17 seq5641 93.3 4e-14 >seq51122 Length=156195299 Score = 259 bits (286), Expect = 5e-64 Identities = 598/891 (67%), Gaps = 25/891 (3%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | | || ||||||||||| |||| | Sbjct 44959179 ACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTCAGT----- 44959233 Query 15962 GATATATTTTCCATAAAATCAAA-GGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020 || ||||| |||||||| ||||| ||| | || || || | ||| | ||||| Sbjct 44959234 GAAATATTCTCCATAAAGTCAAATGGGCTCTCTA-CTCCGAAAACCTTGCTAAAACCCAG 44959292 Query 16021 TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAAT 16080 |||| | | ||| ||||| ||||| || || ||||| ||||| ||||||| || Sbjct 44959293 TTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCAT 44959352 Query 16081 TCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTC 16140 || || || || || | || | || | |||| ||||||||| ||| || | Sbjct 44959353 CCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATT 44959412 Query 16141 TTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTA---GGTGTTTAAACAT 16197 |||| || || | ||| | || || ||| | || || ||||||| ||||| Sbjct 44959413 GATAATTATTTCTCTCACTC---TCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACAT 44959469 Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 | || || || || || |||| || || |||||||| |||||||| |||||||| || Sbjct 44959470 CAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGT 44959529 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 | || ||||| |||||||||||| | ||||||||||| ||||| || || ||||| Sbjct 44959530 GAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAA 44959589 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||| | || || || | || || || | | ||||| | || ||||| ||||| | Sbjct 44959590 GAAGACGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTC 44959649 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | |||||| | |||| || || || | || | |||| ||||||||| ||||| Sbjct 44959650 CCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGC 44959709 Query 16438 CTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | | || ||| | |||| | ||| | || || || ||||| || | ||| Sbjct 44959710 ATTGAAGATAAATTCCC--TTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTA 44959767 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||||||| || |||||||| || ||||| || || || |||||||| || || || || Sbjct 44959768 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCT 44959827 Query 16556 GCTATTTGTAC--TTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | || || || || || |||||| ||| ||| || ||||| || || || |||| Sbjct 44959828 GTAATCTGAACTATTTGAC--TAAATCGCTCCACCAAATTTTCATTTACTATGCCATCAC 44959885 Query 16614 TTGCAGCAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAAT 16671 |||| |||| ||||| || ||| | | || |||| | | || || | | || Sbjct 44959886 TTGCTGCAAAGAAAACCAGAACATGGGAT--ATAAAATCTCTCTCCTCGGGCTTCAGGGA 44959943 Query 16672 ATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCAC 16731 | ||| | | || ||||| | ||||| ||||| | ||||| ||| |||| | Sbjct 44959944 TTCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTC 44960003 Query 16732 TGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 ||||| |||||||| | ||| ||||||| ||| | ||||| || | ||| Sbjct 44960004 CGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAAGATGAC 44960054 Score = 111 bits (122), Expect = 2e-19 Identities = 382/590 (65%), Gaps = 33/590 (6%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||| || |||| || || || ||||| |||||||| |||||||| || Sbjct 144142951 AGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTG 144142892 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||| ||||||| | |||||||||| ||||| || || |||||| Sbjct 144142891 AGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAG 144142832 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || ||| || || ||||| || | ||||| | | ||| | ||||| || Sbjct 144142831 AAGGTACTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTC 144142772 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| ||||| | || || | || | ||| | || ||||| ||||| Sbjct 144142771 CCAATCCAACAGAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATTGTTTCAATGGCA 144142713 Query 16439 TTAAACAA--------TTTCTCTTTT-TCCTGAATATC------------GATTATATAC 16477 || || | ||||| | || || | ||||| |||||| || Sbjct 144142712 TTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATATGTGTCAATAAGGAGATTATTTAT 144142653 Query 16478 GTATCAATCAGTAAACTGTACATT-TCT----GAGTGTATGTTCTCTATGGCTATCTGAA 16532 | || | | | || |||| || ||| || |||||||| ||||| || || || | Sbjct 144142652 TTCTCCTT-ATTGAA-TGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGGA 144142595 Query 16533 ATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGT 16592 ||||||||||||| | || | || || ||||| |||| ||||| ||| || Sbjct 144142594 ATCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGT 144142535 Query 16593 TCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAATA 16650 | |||| | || || |||| ||| ||||| || ||| |||||| | | || |||| Sbjct 144142534 TTTCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAGAATATGGGAT--ATAAAATG 144142477 Query 16651 TTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTC 16710 | |||| |||| | || | ||| | | || ||||| | ||||| || | Sbjct 144142476 TCTTTCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTG 144142417 Query 16711 TGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCAT 16760 | | |||| || | || || | || ||||||||||||||||||||| Sbjct 144142416 GGCCATCCAGAAAGAAACCTCTACTTTCCTATACATTTTCCAAATATCAT 144142367 >seq25851 Length=153482349 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 108797160 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 108797219 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| | || || |||| ||||| | Sbjct 108797220 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 108797279 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 108797280 CCACCACTCTTTCC 108797293 >seq5641 Length=113028656 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| || ||||| || | || ||||| |||||||||||| Sbjct 102562832 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 102562891 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 102562892 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 102562950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511021026436200