Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq45414 232 2e-56 seq40942 129 2e-25 seq14467 105 2e-18 seq39285 96.9 1e-15 >seq45414 Length=3364477 Score = 232 bits (256), Expect = 2e-56 Identities = 292/397 (74%), Gaps = 18/397 (5%) Strand=Plus/Minus Query 6945 ACGATGGTGCTGGGGAACACTCAGGCACGCGGTCTGCGCACCTATG-GCTGCATTCAGGA 7003 || |||||||||||||| || ||||| || || ||||| ||||||| ||||||||| || Sbjct 2349225 ACAATGGTGCTGGGGAATACCCAGGCTCGTGGCCTGCGTACCTATGAGCTGCATTCTTGA 2349166 Query 7004 TGCGGACGCACAGCGCGAAGGCATTAACGCCTCTGCCCGTTACCCGAAAAACTGGGTGAC 7063 ||| || || ||||||||||| || || ||||| | || |||||||||||||||||| Sbjct 2349165 TGCTGATGCCCAGCGCGAAGGTATCAATGCCTCGACACGCTACCCGAAAAACTGGGTGCA 2349106 Query 7064 CACCGGCGATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGC 7123 | || ||||||||||| || |||||||||||||||||||| ||||||||||||||| | Sbjct 2349105 GTCGGGGGATCCGGCGCGCGAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCC 2349046 Query 7124 TGACCCTGATGAGTTCGTGTCCGTACAACTGGCGTAA--TC-----ATGGCCCTTCGGGG 7176 |||||||| | ||||| ||||| ||||||| ||| || ||||||| ||| Sbjct 2349045 AGACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGTCGGG 2348986 Query 7177 CCATTGTTTCTCTGTGGAGGAGT--CCATGAC---GAAAGATGAACTGATTGCCCGTCTC 7231 ||| || | ||||| | | ||||||| |||||| | ||||| || || || Sbjct 2348985 CCA-----CCTTTCTGGAGTATTTCCCATGACAGAGAAAGAAAAGCTGATCGCTCGCCTG 2348931 Query 7232 CGCTCGCTGGGTGAACAACTGAACCGTGATGTCAGCCTGACGGGGACGAAAGAAGAACTG 7291 || || || || ||||| || |||||| | || |||| | ||||| Sbjct 2348930 AATGACCTTGGCACTCAGCTTAACCGCGAGGTCAGCACCAGCGGCACGATTCAGGAACTT 2348871 Query 7292 GCGCTCCGTGTGGCAGAGCTGAAAGAGGAGCTTGATG 7328 || | ||| | || |||||| |||||||||| |||| Sbjct 2348870 ACGATGCGTATTGCTGAGCTGGAAGAGGAGCTGGATG 2348834 >seq40942 Length=108868599 Score = 129 bits (142), Expect = 2e-25 Identities = 194/273 (71%), Gaps = 17/273 (6%) Strand=Plus/Plus Query 7068 GGCGATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGCTGAC 7127 || ||||||||||| || |||||||||||||||||||| ||||||||||||||| | ||| Sbjct 85057840 GGGGATCCGGCGCGCGAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCAGAC 85057899 Query 7128 CCTGATGAGTTCGTGTCCGTACAACTGGCGTAA--TC-----ATGGCCCTTCGGGGCCAT 7180 ||||| | ||||| ||||| ||||||| ||| || ||||||| |||||| Sbjct 85057900 CCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGTCGGGCCA- 85057958 Query 7181 TGTTTCTCTGTGGAGGAGT--CCATGAC---GAAAGATGAACTGATTGCCCGTCTCCGCT 7235 || | ||||| | | ||||||| |||||| ||||||| || || || Sbjct 85057959 ----CCTTTCTGGAGTATTTCCCATGACAGAGAAAGAAAAACTGATCGCTCGCCTGAATG 85058014 Query 7236 CGCTGGGTGAACAACTGAACCGTGATGTCAGCCTGACGGGGACGAAAGAAGAACTGGCGC 7295 || || || || ||||| || |||||| | || |||| | ||||| || Sbjct 85058015 ACCTTGGCACTCAGCTTAACCGCGAGGTCAGCACCAGCGGCACGATTCAGGAACTTACGA 85058074 Query 7296 TCCGTGTGGCAGAGCTGAAAGAGGAGCTTGATG 7328 | ||| | || |||||| |||||||||| |||| Sbjct 85058075 TGCGTATTGCTGAGCTGGAAGAGGAGCTGGATG 85058107 >seq14467 Length=6693 Score = 105 bits (116), Expect = 2e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 7050 AAAAACTGGGTGACCACCGGCGATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCG 7109 |||||||||||| | || ||||||||||| || ||| ||||||||||||||| ||| Sbjct 1922 AAAAACTGGGTGCATTCGGGGGATCCGGCGCGCGAATTCCTCATGATTCAGTCAGCTCCG 1981 Query 7110 CTGATGCTGCTGGCTGACCCTGATGAGTTCGTGTCCGTACAACTGGCGTAA 7160 |||||| ||||| | |||||||| | ||||| ||||| ||||||| ||| Sbjct 1982 CTGATGATGCTGCCAGACCCTGACGCATTCGTCTCCGTCAAACTGGCATAA 2032 >seq39285 Length=117095149 Score = 96.9 bits (106), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 7026 ATTAACGCCTCTGCCCGTTACCCGAAAAACTGGGTGACCACCGGCGATCCGGCGCGTGAG 7085 || || || || ||| |||||||||||||||||| | || ||||||||||| || Sbjct 103031235 ATCAATGCGTCAACCCTCTACCCGAAAAACTGGGTGCAGTCGGGGGATCCGGCGCGCGAA 103031176 Query 7086 TTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGCTGACCCTGATGAGTTCGTGTCC 7145 ||| ||||||||| ||| | ||||||||||||||| | |||||||| | |||| ||| Sbjct 103031175 TTCTTCATGATTCATTCATCTCCGCTGATGCTGCTGCCAGACCCTGACGCATTCGACTCC 103031116 Query 7146 GTACAACTGGCGTAA 7160 | |||||| ||| Sbjct 103031115 -TGTCACTGGCCTAA 103031102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154971475174880