Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq51122 383 2e-101 seq1 156 5e-33 seq36523 107 2e-18 seq5641 104 3e-17 >seq51122 Length=156195299 Score = 383 bits (424), Expect = 2e-101 Identities = 652/939 (69%), Gaps = 21/939 (2%) Strand=Plus/Plus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 23844 |||| |||||| ||||||| | |||| ||| ||| | || |||| |||||||| Sbjct 44959129 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 44959188 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 | || || || || || | | || || || ||||| || | | ||| ||||| | Sbjct 44959189 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44959243 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTT-TAAATCCCAATTCAGAAATC 23963 |||| || || |||| | || | | | ||| |||| |||| ||| || Sbjct 44959244 CCATAAAGTCAAATGGGCTCTCTAC-TCCGAAAACCTTGCTAAAACCCAGTTCCAGCATA 44959302 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 | ||| ||||| |||||||| || ||| ||||| | | |||||||| || || || Sbjct 44959303 AGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGC 44959362 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 || || || | ||| | || || ||||| ||||| || || || | | || || Sbjct 44959363 TTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATT 44959422 Query 24084 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 24143 ||| ||| | || || | | | | | ||||| |||||||| || || ||| Sbjct 44959423 TCTCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAA 44959482 Query 24144 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 24203 || ||||||| |||||| ||||| ||||| | ||| |||||||||||||| || ||||| Sbjct 44959483 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATC 44959542 Query 24204 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 24263 | || || || || ||||| ||||| || ||||| || || |||||||| | |||||| Sbjct 44959543 GGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCT 44959602 Query 24264 ACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 24320 ||||| || ||||| | || | ||| ||||| | | | |||| ||||| Sbjct 44959603 ACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGC 44959662 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 |||||||| |||||||| || ||||||||||| || || || ||||| |||| | | Sbjct 44959663 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGATAAAT 44959722 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | |||| || |||||| | || || ||||| | |||||||||||||| ||||| Sbjct 44959723 TCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGT 44959782 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 |||||||| ||||| ||||| || || |||||||| | || || |||||||| ||| | Sbjct 44959783 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATT 44959842 Query 24501 ATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 24560 || |||||| || | ||||||||||| ||||| || ||||| |||||||| || || Sbjct 44959843 TGACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACC 44959902 Query 24561 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----AT 24616 | ||||| |||||||| | | || || || | || ||||| || || || Sbjct 44959903 AGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGCCGAAT 44959958 Query 24617 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676 || || || | ||||| |||||| ||||| || || ||||| ||||| |||||||| Sbjct 44959959 GTCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 44960018 Query 24677 ATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | |||||| ||||| || | || || || || ||||| Sbjct 44960019 CTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44960057 Score = 187 bits (206), Expect = 3e-42 Identities = 386/576 (67%), Gaps = 34/576 (6%) Strand=Plus/Minus Query 24147 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 24206 ||||||| |||||| || || ||||| | ||| |||||||| ||||| || ||||| || Sbjct 144142936 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144142877 Query 24207 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 24266 || | || || ||||| ||||| | ||||| || ||||||||||| | | ||| ||| Sbjct 144142876 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTACTTTCCACT 144142817 Query 24267 GCCGCAAAGGCAATAAGTCTTTCTCCAT---AACCGGCGCTGTCATGTATCC-ACTTTTG 24322 |||||||| || | |||||||| | || | ||| |||| || | Sbjct 144142816 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACAGAAG 144142757 Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382 | ||||| | |||||||| || |||| ||||||||| || || ||||| |||||| | | Sbjct 144142756 A-CCCAACCTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTC 144142699 Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC--------- 24433 |||| || |||||||| |||||| ||||| | ||| ||| ||||| Sbjct 144142698 CCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCTCCTTATTG 144142641 Query 24434 -----------------CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 ||||| |||||||| || || ||||| ||||| ||||| || Sbjct 144142640 AATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGGAATCCATAGAAGCAG 144142581 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | || |||||||| |||||| | |||| |||| | || ||||||| | ||| Sbjct 144142580 AAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATC 144142521 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 || |||| |||||||| || |||| | ||| |||||||| | |||| || || | Sbjct 144142520 CCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATGTCTTTCCTCAGGCTTC 144142461 Query 24597 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 24656 || | ||| | || || || || | ||||| || | | |||| || || Sbjct 144142460 AGGGCTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAA 144142401 Query 24657 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 ||||| | || ||||||| ||||| || |||||| Sbjct 144142400 ACCTCTACTTTCCTATACATTTTCCAAATATCATGA 144142365 >seq1 Length=229942017 Score = 156 bits (172), Expect = 5e-33 Identities = 240/339 (71%), Gaps = 10/339 (3%) Strand=Plus/Minus Query 24245 AGAA-AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGG 24300 |||| ||||| || ||||| ||||| |||||||| | || | ||| ||||| | | Sbjct 89927029 AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCT 89926970 Query 24301 CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 | |||| || || | ||||||| |||||||| |||||||| ||| | Sbjct 89926969 CTTTGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCTTG---ACACAAGG---TGTTT 89926916 Query 24361 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 24420 | || | || |||||| | | |||| || |||||| | || || ||||| | | Sbjct 89926915 CAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGA 89926856 Query 24421 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 24480 ||||||||||||| ||||| ||||||| ||||| ||||| || | |||||||| | Sbjct 89926855 GACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGG 89926796 Query 24481 CCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 | || |||||||| |||||| | |||||| || | || |||||||| ||||| || | Sbjct 89926795 CTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCCAT 89926736 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 24579 |||| |||||||| || |||| ||| | |||||||| Sbjct 89926735 CACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 89926697 >seq36523 Length=132107971 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 66612661 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66612720 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 66612721 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 66612780 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 66612781 CTGTTTCTTATACCATA 66612797 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 66609841 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 66609900 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 66609901 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 66609960 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 66609961 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 66610011 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 66623538 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 66623597 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 66623598 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 66623657 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 66623658 AGGCTCCAGGTAAAT 66623672 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 66640842 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGA 66640901 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 66640902 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 66640961 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 66640962 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 66641007 >seq5641 Length=113028656 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 102565223 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 102565282 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 102565283 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 102565342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593264916766800