Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq42212 104 2e-17 seq1 93.3 4e-14 seq45237 91.5 1e-13 seq25851 91.5 1e-13 seq20726 89.7 4e-13 seq51122 84.2 2e-11 >seq42212 Length=99152023 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||||| ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 87790292 AAAATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 87790233 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 87790232 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 87790173 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || ||||| |||||||| ||||| || || |||||| ||| || | || ||| Sbjct 87790172 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTAGAAGATGGACGTACTTTGTCTGACTAC 87790113 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 87790112 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 87790078 >seq1 Length=229942017 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 142062508 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTCGAACCC 142062449 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || | ||| || || ||||| ||||| | | ||| Sbjct 142062448 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGAT 142062389 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || | ||||| |||||||| ||||| || ||||||||| ||| || | || ||| Sbjct 142062388 CAGCGGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTAC 142062329 Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164 |||||||| ||||| ||||||||||| Sbjct 142062328 AATATTCAAAAGGAGTCTACTCTTCA 142062303 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||| Sbjct 142066579 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTCAAACCC 142066520 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || | ||| || || ||||| ||||| | | ||| Sbjct 142066519 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGAT 142066460 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || ||||| |||||||| ||||| || ||||||||| ||| || | || ||| Sbjct 142066459 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTAC 142066400 Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164 |||||||| ||||| ||||||||||| Sbjct 142066399 AATATTCAAAAGGAGTCTACTCTTCA 142066374 >seq45237 Length=73212453 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||| Sbjct 10340547 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCT 10340606 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| | | | | || | ||| || || ||||| |||| | || ||| Sbjct 10340607 TCAGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGAAAGGAATTCCTCCTGAT 10340666 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||||||| |||||||| ||||| |||||||||||| ||| || | | ||| Sbjct 10340667 CAGCAAAGACCGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGGCTAC 10340726 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| || || ||||||||||| | ||||| Sbjct 10340727 AATATTCAAAAAGAGTCTACTCTTCATTTTGTGTT 10340761 >seq25851 Length=153482349 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||||| ||||| | | ||| || ||||| ||| | | |||||| Sbjct 83238415 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACCATCACCCTCAAGGTTGAACCC 83238474 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || | | | | || | ||| || || ||||| ||||| | || || Sbjct 83238475 TCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTCAT 83238534 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || ||||| |||||||| ||||| || ||||||||| ||| || | || ||| Sbjct 83238535 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTAC 83238594 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 83238595 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 83238629 >seq20726 Length=174210431 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||| |||||||| |||||||| ||||| ||||||||| Sbjct 115806373 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 115806432 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| ||| || | || |||| |||||| ||||| ||||||||||| | ||||| Sbjct 115806433 GATGGATGTACTTTGTCTGACTACAGTATTCAAAAGGAGTCTACTCTTCATTTTGTGTT 115806491 >seq51122 Length=156195299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 ||| |||| || ||| | ||||| | | ||| || ||||| ||| || | |||||| Sbjct 3370711 AAACTGCAGATTTTCGTGAAAACCCTAAGGGGGAAGACCATCACCCTTGAGGCTGAACCC 3370770 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| || | | || | ||| || || ||||| ||||| | | ||| Sbjct 3370771 TCAGATGCGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGAT 3370830 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| |||||||||||| ||| || | || | | Sbjct 3370831 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGC 3370890 Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164 || ||||| ||||| |||||||||| Sbjct 3370891 AACATTCAAAAGGAGCCTACTCTTCA 3370916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428014766070425