Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq42212 104 2e-17
seq1 93.3 4e-14
seq45237 91.5 1e-13
seq25851 91.5 1e-13
seq20726 89.7 4e-13
seq51122 84.2 2e-11
>seq42212
Length=99152023
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||||| ||||| | ||||| || ||||| ||| ||| ||||||
Sbjct 87790292 AAAATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 87790233
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || ||| | | || | ||| || || ||||| ||||| | || |||
Sbjct 87790232 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 87790173
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| || ||||| |||||||| ||||| || || |||||| ||| || | || |||
Sbjct 87790172 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTAGAAGATGGACGTACTTTGTCTGACTAC 87790113
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|||||||| ||||| ||||||||||| | |||||
Sbjct 87790112 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 87790078
>seq1
Length=229942017
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| ||||||
Sbjct 142062508 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTCGAACCC 142062449
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || ||| | | || | ||| || || ||||| ||||| | | |||
Sbjct 142062448 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGAT 142062389
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| | ||||| |||||||| ||||| || ||||||||| ||| || | || |||
Sbjct 142062388 CAGCGGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTAC 142062329
Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164
|||||||| ||||| |||||||||||
Sbjct 142062328 AATATTCAAAAGGAGTCTACTCTTCA 142062303
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||
Sbjct 142066579 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTCAAACCC 142066520
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || ||| | | || | ||| || || ||||| ||||| | | |||
Sbjct 142066519 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGAT 142066460
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| || ||||| |||||||| ||||| || ||||||||| ||| || | || |||
Sbjct 142066459 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTAC 142066400
Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164
|||||||| ||||| |||||||||||
Sbjct 142066399 AATATTCAAAAGGAGTCTACTCTTCA 142066374
>seq45237
Length=73212453
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||
Sbjct 10340547 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCT 10340606
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
|||| | | | | || | ||| || || ||||| |||| | || |||
Sbjct 10340607 TCAGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGAAAGGAATTCCTCCTGAT 10340666
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| ||||||| |||||||| ||||| |||||||||||| ||| || | | |||
Sbjct 10340667 CAGCAAAGACCGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGGCTAC 10340726
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|||||||| || || ||||||||||| | |||||
Sbjct 10340727 AATATTCAAAAAGAGTCTACTCTTCATTTTGTGTT 10340761
>seq25851
Length=153482349
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
|||||||| || ||||| ||||| | | ||| || ||||| ||| | | ||||||
Sbjct 83238415 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACCATCACCCTCAAGGTTGAACCC 83238474
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
| || | | | | || | ||| || || ||||| ||||| | || ||
Sbjct 83238475 TCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTCAT 83238534
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| || ||||| |||||||| ||||| || ||||||||| ||| || | || |||
Sbjct 83238535 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTAC 83238594
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|||||||| ||||| ||||||||||| | |||||
Sbjct 83238595 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 83238629
>seq20726
Length=174210431
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| ||||| | || ||||| |||||||| |||||||| ||||| |||||||||
Sbjct 115806373 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 115806432
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
||| ||| || | || |||| |||||| ||||| ||||||||||| | |||||
Sbjct 115806433 GATGGATGTACTTTGTCTGACTACAGTATTCAAAAGGAGTCTACTCTTCATTTTGTGTT 115806491
>seq51122
Length=156195299
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018
||| |||| || ||| | ||||| | | ||| || ||||| ||| || | ||||||
Sbjct 3370711 AAACTGCAGATTTTCGTGAAAACCCTAAGGGGGAAGACCATCACCCTTGAGGCTGAACCC 3370770
Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078
|||| || | | || | ||| || || ||||| ||||| | | |||
Sbjct 3370771 TCAGATGCGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGAT 3370830
Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138
|| |||||||| |||||||| ||||| |||||||||||| ||| || | || | |
Sbjct 3370831 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGC 3370890
Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164
|| ||||| ||||| ||||||||||
Sbjct 3370891 AACATTCAAAAGGAGCCTACTCTTCA 3370916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428014766070425
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |