Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq10472 203 4e-47 seq1 163 3e-35 seq46691 159 4e-34 seq47930 123 3e-23 >seq10472 Length=202140232 Score = 203 bits (224), Expect = 4e-47 Identities = 569/865 (66%), Gaps = 19/865 (2%) Strand=Plus/Minus Query 176394 TTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACT 176453 ||||||||| | | |||||||| || |||||| ||||| || | || || | || Sbjct 100293386 TTGGGCAATGTGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACC 100293327 Query 176454 AACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTT 176513 ||||| | ||| | ||| |||| || || ||| | || || || || || | || || Sbjct 100293326 AACATCTACCTGCTCAACCTGGCCATTTCGGACCTACTCTTCCTCTTCACCCTTCCGTTC 100293267 Query 176514 TGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTG 176573 ||||| |||||| | | | | ||| | ||| ||| || | | ||||||| || Sbjct 100293266 TGGATCCACTATGTCAGG--GGA-CATAACTGGGTTTTCGGCCATGGCATGTGTAAGCTC 100293210 Query 176574 CTC--AGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAA 176631 ||| |||| | | | ||| | |||||||| || |||||| ||| |||||||| | Sbjct 100293209 CTCTCAGGGTTTTATCACACAGGCT--TGTACAGCGAGATCTTTTTCATAATCCTGCTGA 100293152 Query 176632 CAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAA 176691 | | |||||||| || || ||||| | || || ||| | | | || || | Sbjct 100293151 CGATCGACAGGTACCTGGCCATTGTCCACGCGGTGTTTGCCCTTCGAACCCGGACTGTCA 100293092 Query 176692 CCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTG 176751 | | ||| | | ||| | | |||||| ||||||| | | | || |||| Sbjct 100293091 CTTTTGGTGTCATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTG 100293032 Query 176752 AATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTAC 176810 ||||| |||| ||| |||| | | | || | | || | || ||| Sbjct 100293031 AATTTATCTTCTATGAGATTGAAGA-GTTGTTTGAAGAGACTTTTTGCAGTGCTGTTTAC 100292973 Query 176811 CCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGT 176870 |||||| | | || ||||||| |||| | | ||| || || || Sbjct 100292972 CCAGAGGATACAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTCTGT 100292913 Query 176871 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 176930 || || | ||||||||| ||||||| |||||||| | ||| |||| || ||| || Sbjct 100292912 CTTGTTCTCCCTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTG 100292853 Query 176931 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 176990 ||| ||||||| || || ||||||||||||||| ||||||| ||||||||||||| || Sbjct 100292852 AGGTGCCCCAGTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCGGTG 100292793 Query 176991 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACC 177050 | ||| |||| |||||||||||||| | | | |||| || ||| ||| ||| | | Sbjct 100292792 TTTTTCATTTTCTGGACACCCTACAATGTGGCTATCCTTCTCTCTTCCTATCA----ATC 100292737 Query 177051 CTTCTTA-----ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAA 177105 | ||||| | || | |||| ||||| | ||||| ||| ||||| | | Sbjct 100292736 CATCTTATTTGGAAATG-ACTGTGAGCGGAGCAAGCATCTGGACCTGGTCTTGCTGGTGA 100292678 Query 177106 CAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGG 177165 || | | |||||| | ||||| ||| | ||||| ||||||||||| || || || | Sbjct 100292677 CAGAGGTGATCGCCTACTCCCACTGCTGCGTGAACCCGGTGATCTACGCCTTTGTTGGAG 100292618 Query 177166 AGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCA 177225 ||| ||| | | ||||| |||||||||||||| || || ||| |||| ||| Sbjct 100292617 AGAGGTTCCGGAAGTACCTGCGCCACTTCTTCCACAGGCACATGTTCATGCACCTGGGCA 100292558 Query 177226 AGTACATCCCCTTCCTGTCTGGTGA 177250 |||||||| ||||| || |||| Sbjct 100292557 GATACATCCCATTCCTTCCTAGTGA 100292533 Score = 203 bits (224), Expect = 4e-47 Identities = 569/865 (66%), Gaps = 19/865 (2%) Strand=Plus/Minus Query 9508 TTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACT 9567 ||||||||| | | |||||||| || |||||| ||||| || | || || | || Sbjct 100293386 TTGGGCAATGTGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACC 100293327 Query 9568 AACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTT 9627 ||||| | ||| | ||| |||| || || ||| | || || || || || | || || Sbjct 100293326 AACATCTACCTGCTCAACCTGGCCATTTCGGACCTACTCTTCCTCTTCACCCTTCCGTTC 100293267 Query 9628 TGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTG 9687 ||||| |||||| | | | | ||| | ||| ||| || | | ||||||| || Sbjct 100293266 TGGATCCACTATGTCAGG--GGA-CATAACTGGGTTTTCGGCCATGGCATGTGTAAGCTC 100293210 Query 9688 CTC--AGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAA 9745 ||| |||| | | | ||| | |||||||| || |||||| ||| |||||||| | Sbjct 100293209 CTCTCAGGGTTTTATCACACAGGCT--TGTACAGCGAGATCTTTTTCATAATCCTGCTGA 100293152 Query 9746 CAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAA 9805 | | |||||||| || || ||||| | || || ||| | | | || || | Sbjct 100293151 CGATCGACAGGTACCTGGCCATTGTCCACGCGGTGTTTGCCCTTCGAACCCGGACTGTCA 100293092 Query 9806 CCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTG 9865 | | ||| | | ||| | | |||||| ||||||| | | | || |||| Sbjct 100293091 CTTTTGGTGTCATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTG 100293032 Query 9866 AATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTAC 9924 ||||| |||| ||| |||| | | | || | | || | || ||| Sbjct 100293031 AATTTATCTTCTATGAGATTGAAGA-GTTGTTTGAAGAGACTTTTTGCAGTGCTGTTTAC 100292973 Query 9925 CCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGT 9984 |||||| | | || ||||||| |||| | | ||| || || || Sbjct 100292972 CCAGAGGATACAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTCTGT 100292913 Query 9985 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 10044 || || | ||||||||| ||||||| |||||||| | ||| |||| || ||| || Sbjct 100292912 CTTGTTCTCCCTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTG 100292853 Query 10045 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 10104 ||| ||||||| || || ||||||||||||||| ||||||| ||||||||||||| || Sbjct 100292852 AGGTGCCCCAGTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCGGTG 100292793 Query 10105 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACC 10164 | ||| |||| |||||||||||||| | | | |||| || ||| ||| ||| | | Sbjct 100292792 TTTTTCATTTTCTGGACACCCTACAATGTGGCTATCCTTCTCTCTTCCTATCA----ATC 100292737 Query 10165 CTTCTTA-----ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAA 10219 | ||||| | || | |||| ||||| | ||||| ||| ||||| | | Sbjct 100292736 CATCTTATTTGGAAATG-ACTGTGAGCGGAGCAAGCATCTGGACCTGGTCTTGCTGGTGA 100292678 Query 10220 CAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGG 10279 || | | |||||| | ||||| ||| | ||||| ||||||||||| || || || | Sbjct 100292677 CAGAGGTGATCGCCTACTCCCACTGCTGCGTGAACCCGGTGATCTACGCCTTTGTTGGAG 100292618 Query 10280 AGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCA 10339 ||| ||| | | ||||| |||||||||||||| || || ||| |||| ||| Sbjct 100292617 AGAGGTTCCGGAAGTACCTGCGCCACTTCTTCCACAGGCACATGTTCATGCACCTGGGCA 100292558 Query 10340 AGTACATCCCCTTCCTGTCTGGTGA 10364 |||||||| ||||| || |||| Sbjct 100292557 GATACATCCCATTCCTTCCTAGTGA 100292533 >seq1 Length=229942017 Score = 163 bits (180), Expect = 3e-35 Identities = 134/159 (84%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||| ||| | ||||||| || || || ||||||||||||||||| | ||| Sbjct 43407826 CAGCGCCGCAGCGTCAGCATGAGGGTCTTCAGGTTCTCCCCCAGGGAGTTCACATGCTCC 43407767 Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199 || | |||| || || |||||||| || |||||||||||||||||||||||||||| Sbjct 43407766 TTGATGTCTGG---GT-CT-TGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACT 43407712 Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||||| ||| ||||| ||||||||||||| Sbjct 43407711 GGATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 43407673 Score = 114 bits (126), Expect = 2e-20 Identities = 83/96 (86%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 |||||||| ||||| | ||||||||||| ||||||||||| |||||||||||||||| Sbjct 43410286 CTCAGTTTCGTATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 43410227 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||||| ||||||| ||||| || ||||||| Sbjct 43410226 CGCTCATGGCTTTGTAGATGCCTTTCTCTTGGAGCT 43410191 >seq46691 Length=94050890 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 32059108 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 32059167 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| ||||| | |||||||||||||||||| ||||| | | | || Sbjct 32059168 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 32059227 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| ||||| || ||||| ||||| Sbjct 32059228 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 32059268 >seq47930 Length=60714840 Score = 123 bits (136), Expect = 3e-23 Identities = 217/307 (71%), Gaps = 12/307 (4%) Strand=Plus/Plus Query 145582 TCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTG 145641 |||| | |||||| ||||| |||| ||||| | ||| || | ||||| || Sbjct 36491638 TCCACCTGAAAGTCTTCCGCT-TGAAATCATCACTTGTCTCAACTTTCTGAAGGATTTTG 36491696 Query 145642 AGCCT-GGGAAAGGGCCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGT 145699 ||| | |||||||| | || ||| ||| ||||| | ||||| | | ||| Sbjct 36491697 AGCTTTGGGAAAGGTCTTGGTTCTCTCTGA--AGCTGAATTTTCAGTTTTGCAATGTGAC 36491754 Query 145700 TGAGGTAGACGTGCGCGTCCCCCA--GGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGT 145757 | ||||| || | | | || |||| | | ||| |||||| || |||| ||| |||| Sbjct 36491755 TCAGGTAAACATACACATCTCCCAAAGTATGTGC--GAAGTCACCAGGCTTTAGGTCCGT 36491812 Query 145758 GAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGG-GCACCCCCA 145816 || ||| | || || || || ||||||| |||||||| |||||||||| |||||| | Sbjct 36491813 GATGTGTGTGATCACATAAGTGAGCAGGGCGTAGCTGGTGATGTTGAAGGTGCACCC--A 36491870 Query 145817 GCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGA 145876 | ||| |||| || || | ||||| |||||||||||| ||||| ||| | ||||| ||| Sbjct 36491871 GGCCCCTGTCTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACCACGAAGA 36491930 Query 145877 ACTGGCA 145883 ||||||| Sbjct 36491931 ACTGGCA 36491937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589622920301400