Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq49978 428 5e-115 seq10472 316 2e-81 seq50409 288 1e-72 seq20726 129 7e-25 >seq49978 Length=48394510 Score = 428 bits (474), Expect = 5e-115 Identities = 451/588 (77%), Gaps = 4/588 (1%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| |||| | | | | ||||||| ||||| |||||||||||| Sbjct 27660607 AGCAGGGCTTCGATGTCAGGCTGGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCAT 27660666 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||||| ||||||| ||||||||| ||||||||||| || ||| |||| Sbjct 27660667 ACAGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATCGATGCGA 27660726 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| | |||||||| ||||||| ||| ||| ||| |||| | ||||||||| Sbjct 27660727 CACACCGCAGACCAGGTGATGAGCTTGGG-TCGATCATGAGCCCAGTGGCGTCGTCGCTG 27660785 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||| || |||| || ||||||| ||||| || | |||| |||||||| ||| Sbjct 27660786 GGGGCTGGCCGG-CCTCCCGCAGGAAGGAAAAGAGAGGGTTCGCCCCCGCACCGTTCACC 27660844 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || |||||||| |||||||| ||| | |||||||| | ||||| |||||| ||| Sbjct 27660845 TCCCACTTCTCCAAGAGCATGAAGCTGGGCTCGAACGCACCACCAGGTTGGACGTACTTG 27660904 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| || ||||| | |||| |||||| ||||| || || |||||||| |||||| Sbjct 27660905 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGG 27660964 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || ||||| ||||| ||| | | | |||||||||||||||||||||||||| ||| Sbjct 27660965 AAGCCGAGCACCACCAGACCCTGGGGCCAGAGGCGCCGCTGCAGCTCGTTCATCTGGGTG 27661024 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || ||||| |||||| | |||||||||||||| || |||||||| | | ||| |||| Sbjct 27661025 TAGTCCCGCACCGTGGTGCCTCAGAGGGACGCCACATTCTCGATAAATAGCACCTTGCCC 27661084 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | |||| | ||||||||| || || |||| | |||||| || || ||||| ||| Sbjct 27661085 CGCAGGGAGCCCAGGCTCACAGGCTCGCCGCCGGCCAGCGGGCGCGCGGAAAAGGCTTAC 27661144 Query 83597 ACAGATCTGGTC-TCTGCCGCGGCAAGCTGTGCCGCGTACTTGGCACA 83643 || || |||| | | ||||| || ||| | || || || |||| || Sbjct 27661145 ACCGA-CTGGGCAGCCGCCGCCGCTAGCGGAGCAGCACACATGGCGCA 27661191 >seq10472 Length=202140232 Score = 316 bits (350), Expect = 2e-81 Identities = 273/338 (81%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115 |||||| || |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 97159404 GAGCAGAGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCG 97159345 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 | |||| ||||||| ||||||| ||||||||| ||||||||||| || |||||||| Sbjct 97159344 TAGGGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATCGTTGCG 97159285 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 ||||| |||||||||| ||||||| ||||||| ||| |||| | ||||||||| Sbjct 97159284 ACACACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATAAGCGCAGTGGCGTCGTCGCT 97159225 Query 83236 AGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGAC 83295 || || ||||||||||| || |||||||||||||| || || |||| |||||||| || Sbjct 97159224 GGGGGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGCCCCCGCACCGTTCAC 97159165 Query 83296 CTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTT 83355 ||||||||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 97159164 CTCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTT 97159105 Query 83356 CAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || ||||| | |||| |||||| |||| Sbjct 97159104 GAGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCT 97159067 Score = 201 bits (222), Expect = 1e-46 Identities = 175/216 (81%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | ||| |||| Sbjct 97158786 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGTCCGAGGC 97158727 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| | ||||| |||||||| | Sbjct 97158726 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAAAGGGACGCCA 97158667 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | |||||||| || | ||| |||||| | | |||| | ||||||||| || || |||| Sbjct 97158666 CATTCTCGATAAGTAGTACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGG 97158607 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGG 83606 | |||||| || ||||||| ||||| || |||| Sbjct 97158606 CCAGCGGGCGCGCCGAGAAGGAATACACCGA-CTGG 97158572 >seq50409 Length=2981 Score = 288 bits (318), Expect = 1e-72 Identities = 312/409 (76%), Gaps = 6/409 (1%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| |||| | | | | ||||||| ||||| |||||||||||| Sbjct 2575 AGCAGGGCTTCGATGTCAGGCTGGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCAT 2634 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||||| ||||||| |||||| || ||||||||||| || ||| |||| Sbjct 2635 ACAGGCACACCGTCAGGGCCCACCAGGAACTTGTCAAAGTTCCAGGCAACATCGATGCGA 2694 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| | |||||||| ||||||| |||||| ||| |||| | ||||||||| Sbjct 2695 CACACCGCAGACCAGGTGATGAGCT-TGGGTCGATCATGAGCCCAGTGGCGTCGTCGCTG 2753 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||| |||||| || ||||||| ||||| || | |||| |||||||| ||| Sbjct 2754 GGGGCTGGC-CGGCCTCCCGCAGGAAGGAAAAGAGAGGGTTCGCCCCCGCACCGTTCACC 2812 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || |||||||| |||||||| ||| | |||||||| | ||||| |||||| ||| Sbjct 2813 TCCCACTTCTCCAAGAGCATGAAGCTGGGCTCGAACGCACCACCAGGTTGGACGTACTTG 2872 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGG-TTACACGG 83415 |||||| || ||||| | |||| |||||| ||||| || || |||||| || ||||| Sbjct 2873 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTTGCACGG 2932 Query 83416 GAACCCAAGCACTACCAGCCCCC---GAGCTCCTAGGCGCCGCTGCAGC 83461 ||| || ||||| ||||| |||| | || ||||||||||||||| Sbjct 2933 GAAGCCGAGCACCACCAGACCCCTGGGGGCCAGGAGGCGCCGCTGCAGC 2981 >seq20726 Length=174210431 Score = 129 bits (142), Expect = 7e-25 Identities = 208/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 109065650 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 109065592 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 109065591 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 109065532 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | | |||| ||||| Sbjct 109065531 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCCTCCCGCATCAAGCTCATCCGCCACTAC 109065473 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643 |||||| |||| ||||| ||||| ||||| ||||| |||| | ||||| | Sbjct 109065472 GTGCAGCTGCTCTACCCG----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 109065417 Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || ||||| ||||||||||||||||| | |||||| || |||||| Sbjct 109065416 GGGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAAAGGCGC 109065368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608328521111400