Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq49978 428 5e-115
seq10472 316 2e-81
seq50409 288 1e-72
seq20726 129 7e-25
>seq49978
Length=48394510
Score = 428 bits (474), Expect = 5e-115
Identities = 451/588 (77%), Gaps = 4/588 (1%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| |||||||| |||| | | | | ||||||| ||||| ||||||||||||
Sbjct 27660607 AGCAGGGCTTCGATGTCAGGCTGGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCAT 27660666
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| ||| ||||||| ||||||| ||||||||| ||||||||||| || ||| ||||
Sbjct 27660667 ACAGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATCGATGCGA 27660726
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| | |||||||| ||||||| ||| ||| ||| |||| | |||||||||
Sbjct 27660727 CACACCGCAGACCAGGTGATGAGCTTGGG-TCGATCATGAGCCCAGTGGCGTCGTCGCTG 27660785
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|| || ||| || |||| || ||||||| ||||| || | |||| |||||||| |||
Sbjct 27660786 GGGGCTGGCCGG-CCTCCCGCAGGAAGGAAAAGAGAGGGTTCGCCCCCGCACCGTTCACC 27660844
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|| |||||||| |||||||| ||| | |||||||| | ||||| |||||| |||
Sbjct 27660845 TCCCACTTCTCCAAGAGCATGAAGCTGGGCTCGAACGCACCACCAGGTTGGACGTACTTG 27660904
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416
|||||| || ||||| | |||| |||||| ||||| || || |||||||| ||||||
Sbjct 27660905 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGG 27660964
Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476
|| || ||||| ||||| ||| | | | |||||||||||||||||||||||||| |||
Sbjct 27660965 AAGCCGAGCACCACCAGACCCTGGGGCCAGAGGCGCCGCTGCAGCTCGTTCATCTGGGTG 27661024
Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536
|| ||||| |||||| | |||||||||||||| || |||||||| | | ||| ||||
Sbjct 27661025 TAGTCCCGCACCGTGGTGCCTCAGAGGGACGCCACATTCTCGATAAATAGCACCTTGCCC 27661084
Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596
|| | | |||| | ||||||||| || || |||| | |||||| || || ||||| |||
Sbjct 27661085 CGCAGGGAGCCCAGGCTCACAGGCTCGCCGCCGGCCAGCGGGCGCGCGGAAAAGGCTTAC 27661144
Query 83597 ACAGATCTGGTC-TCTGCCGCGGCAAGCTGTGCCGCGTACTTGGCACA 83643
|| || |||| | | ||||| || ||| | || || || |||| ||
Sbjct 27661145 ACCGA-CTGGGCAGCCGCCGCCGCTAGCGGAGCAGCACACATGGCGCA 27661191
>seq10472
Length=202140232
Score = 316 bits (350), Expect = 2e-81
Identities = 273/338 (81%), Gaps = 0/338 (0%)
Strand=Plus/Minus
Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115
|||||| || |||||||| ||||| | | | | ||||||| ||||| |||||||||||||
Sbjct 97159404 GAGCAGAGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCG 97159345
Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175
| |||| ||||||| ||||||| ||||||||| ||||||||||| || ||||||||
Sbjct 97159344 TAGGGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATCGTTGCG 97159285
Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235
||||| |||||||||| ||||||| ||||||| ||| |||| | |||||||||
Sbjct 97159284 ACACACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATAAGCGCAGTGGCGTCGTCGCT 97159225
Query 83236 AGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGAC 83295
|| || ||||||||||| || |||||||||||||| || || |||| |||||||| ||
Sbjct 97159224 GGGGGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGCCCCCGCACCGTTCAC 97159165
Query 83296 CTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTT 83355
||||||||||||||||||||| ||||| |||||||| || ||||| ||||||| |||
Sbjct 97159164 CTCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTT 97159105
Query 83356 CAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393
|||||| || ||||| | |||| |||||| ||||
Sbjct 97159104 GAGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCT 97159067
Score = 201 bits (222), Expect = 1e-46
Identities = 175/216 (81%), Gaps = 1/216 (0%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| |||||||| || ||||| ||||| ||||| | ||| ||||
Sbjct 97158786 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGTCCGAGGC 97158727
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||||||||||||||| ||||| |||||||||||| | ||||| |||||||| |
Sbjct 97158726 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAAAGGGACGCCA 97158667
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| |||||||| || | ||| |||||| | | |||| | ||||||||| || || ||||
Sbjct 97158666 CATTCTCGATAAGTAGTACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGG 97158607
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGG 83606
| |||||| || ||||||| ||||| || ||||
Sbjct 97158606 CCAGCGGGCGCGCCGAGAAGGAATACACCGA-CTGG 97158572
>seq50409
Length=2981
Score = 288 bits (318), Expect = 1e-72
Identities = 312/409 (76%), Gaps = 6/409 (1%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| |||||||| |||| | | | | ||||||| ||||| ||||||||||||
Sbjct 2575 AGCAGGGCTTCGATGTCAGGCTGGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCAT 2634
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| ||| ||||||| ||||||| |||||| || ||||||||||| || ||| ||||
Sbjct 2635 ACAGGCACACCGTCAGGGCCCACCAGGAACTTGTCAAAGTTCCAGGCAACATCGATGCGA 2694
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| | |||||||| ||||||| |||||| ||| |||| | |||||||||
Sbjct 2695 CACACCGCAGACCAGGTGATGAGCT-TGGGTCGATCATGAGCCCAGTGGCGTCGTCGCTG 2753
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|| || ||| |||||| || ||||||| ||||| || | |||| |||||||| |||
Sbjct 2754 GGGGCTGGC-CGGCCTCCCGCAGGAAGGAAAAGAGAGGGTTCGCCCCCGCACCGTTCACC 2812
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|| |||||||| |||||||| ||| | |||||||| | ||||| |||||| |||
Sbjct 2813 TCCCACTTCTCCAAGAGCATGAAGCTGGGCTCGAACGCACCACCAGGTTGGACGTACTTG 2872
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGG-TTACACGG 83415
|||||| || ||||| | |||| |||||| ||||| || || |||||| || |||||
Sbjct 2873 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTTGCACGG 2932
Query 83416 GAACCCAAGCACTACCAGCCCCC---GAGCTCCTAGGCGCCGCTGCAGC 83461
||| || ||||| ||||| |||| | || |||||||||||||||
Sbjct 2933 GAAGCCGAGCACCACCAGACCCCTGGGGGCCAGGAGGCGCCGCTGCAGC 2981
>seq20726
Length=174210431
Score = 129 bits (142), Expect = 7e-25
Identities = 208/291 (71%), Gaps = 15/291 (5%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| |||
Sbjct 109065650 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 109065592
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| || |||||||| || |||||||||| || ||| | |||||||
Sbjct 109065591 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 109065532
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| |||| || ||||| ||| | | |||| |||||
Sbjct 109065531 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCCTCCCGCATCAAGCTCATCCGCCACTAC 109065473
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643
|||||| |||| ||||| ||||| ||||| ||||| |||| | ||||| |
Sbjct 109065472 GTGCAGCTGCTCTACCCG----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 109065417
Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
|| ||||| ||||||||||||||||| | |||||| || ||||||
Sbjct 109065416 GGGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAAAGGCGC 109065368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608328521111400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |