Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq10472 91.5 2e-13 seq1 89.7 8e-13 seq47930 86.0 9e-12 seq51122 84.2 3e-11 >seq10472 Length=202140232 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 124541 GCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGA 124600 ||| || ||| | ||||| || || ||||| || |||||| | ||| | || ||| ||| Sbjct 119681601 GCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATAACTCTTGAGGTCGAGCCAAGTGA 119681542 Query 124601 TACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACA 124660 || ||| ||| | ||| ||||||||||| ||| |||||| |||||||| || || Sbjct 119681541 CACCATTGAGAATGTCAAAGCCAAAATTCAAGA-CAAGGAGGTATCCCACCTGACCAGCA 119681483 Query 124661 AAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATAT 124720 || || |||| || ||||| | |||||| ||||||| | ||| || || || Sbjct 119681482 GCATCTGATACTTGCCGGCAAACAGCTGGAGGATGGTCGAACTCTCTCAGACTACAACAT 119681423 Query 124721 TCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 | ||||| || || |||| |||| | || | | || ||| |||| Sbjct 119681422 CCGGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCAAGATGGCATTA 119681373 >seq1 Length=229942017 Score = 89.7 bits (98), Expect = 8e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || |||||||| || || | ||| | || | | | Sbjct 221680119 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 221680060 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || || ||||| || ||||| || Sbjct 221680059 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCGCCTGACCAG 221680000 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || ||||| | |||||| | | || | || || || Sbjct 221679999 CAGCGTCTGATATTTGCTGGCAAACAGCTGGAGGATGGCCACACTCTCTCTGACTACAAC 221679940 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || |||| |||| || || | | |||||| |||| Sbjct 221679939 ATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCAAGGTGGCATTA 221679888 >seq47930 Length=60714840 Score = 86.0 bits (94), Expect = 9e-12 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 205688 ATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAAT 205747 |||| |||| |||||||| || ||||| || ||||||||| ||||| || ||||||| Sbjct 36493589 ATTGGTCAACTCCTTGATCTGAATAATCTGAATCCATATCTTCATATTCTGC-CCAAAAT 36493647 Query 205748 GACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTT 205789 | | ||| || || ||||||||||| || || || ||||||| Sbjct 36493648 GCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTT 36493689 >seq51122 Length=156195299 Score = 84.2 bits (92), Expect = 3e-11 Identities = 262/379 (69%), Gaps = 39/379 (10%) Strand=Plus/Plus Query 228191 taattaaattaaatattagtaattgtaatataataaatgctagttctttaaaaaatttaa 228250 |||||| ||||| || | ||||| || |||| || | || | | ||| |||| | Sbjct 50337718 TAATTATATTAAG-ATAAATAATTATATTATATTA--TTATATTAATAAAAACAATTATA 50337774 Query 228251 ttaatt------ta-aaagaattggatatatctaacaattataatataaatatttC-ATC 228302 |||||| || ||| |||| || ||| || || ||||||||||||| || || Sbjct 50337775 TTAATTATATAATATAAATAATTATAT-TATATAGTAAATATAATATAAATAATTATATT 50337833 Query 228303 AT-TACCaaa---aacattaattaaattaaat-at-tagttcatgtaatataaaaaatac 228356 || || ||| || || ||| ||||| || || |||| || ||||||||| ||| Sbjct 50337834 ATATAGTAAATATAATATAAAT--AATTATATTATATAGTAAATATAATATAAATAATTA 50337891 Query 228357 taattttataattaatttagataatttGAAAGAATTAGATATATCTAGAAATTTTAATAT 228416 || || |||| | ||| ||||| | ||| ||||| || ||| ||| || | |||||| Sbjct 50337892 TA-TTATATAGTAAAT----ATAATAT-AAATAATTATAT-TATATAGGAAATATAATAT 50337944 Query 228417 AAAT-ATTTCATCAT-TACCAAA-ATCAT-TAATCAAATTAAATAT-TAGGACATGTTAT 228471 |||| ||| || || || ||| || || ||| || | | ||| ||||| || | || Sbjct 50337945 AAATAATTATATTATATAGGAAATATAATATAAATAATTATATTATATAGGAAATATAAT 50338004 Query 228472 ATAAAAAATACTAATTTTATAATTAATTTAGATAATTTGAAAGAATTAGATATATCTAGA 228531 ||||| ||| | ||| |||| ||| ||||| | ||| ||||| || ||| ||| Sbjct 50338005 ATAAATAATTAT-ATTATATAGGAAAT----ATAATAT-AAATAATTATAT-TATATAGG 50338057 Query 228532 AATTTTAATATAAATATTT 228550 || | ||||||||||| || Sbjct 50338058 AAATATAATATAAATAATT 50338076 Score = 84.2 bits (92), Expect = 3e-11 Identities = 283/412 (69%), Gaps = 43/412 (10%) Strand=Plus/Plus Query 228468 TTATATAAAAAATACTAATTTTATAATTAATTTAGATAATTTGAAAGAATTAGATATATC 228527 |||||| || || | |||| ||| ||||| | ||||| | ||| ||||| || ||| Sbjct 50337752 TTATATTAATAAAAACAATTATAT---TAATT-ATATAATAT-AAATAATTATAT-TATA 50337805 Query 228528 TAGAAATTTTAATATAAATATTTC-ATCAT-TACCAAA------ATCATTGATTACATTA 228579 ||| || | ||||||||||| || || || || ||| || | | |||| |||| Sbjct 50337806 TAGTAAATATAATATAAATAATTATATTATATAGTAAATATAATATAAATAATTATATTA 50337865 Query 228580 AATATTAATTCATGTTATATAAAACACACTAATTTTATAA-ATGATTTATATAATTTGAA 228638 ||| ||| || | ||||||| ||||| ||| | || | ||||||| | || Sbjct 50337866 TATAGTAA---ATATAATATAAA------TAATTATATTATATAGTAAATATAATATAAA 50337916 Query 228639 GGAATTGGATATATCTAGAAATTATAATATAAAT-ATTTCATCAT-TACCAAA-ATCAT- 228694 |||| || ||| ||| || |||||||||||| ||| || || || ||| || || Sbjct 50337917 T-AATTATAT-TATATAGGAAATATAATATAAATAATTATATTATATAGGAAATATAATA 50337974 Query 228695 TAATCAAATTAAATAT-TAGTGATTGCGATATTAAAAATACTAATTTTATAAATGATTTA 228753 ||| || | | ||| ||| | | ||| || ||||| | || ||||| | || | Sbjct 50337975 TAAATAATTATATTATATAGGAAAT---ATAATATAAATAATTATATTATATAGGA--AA 50338029 Query 228754 GATAATTTGAAAGAATTAGATATATCTAACAATTATAATATAAATATTTCATCATTACCA 228813 ||||| | ||| ||||| || ||| || || ||||||||||||| || || |||| Sbjct 50338030 TATAATAT-AAATAATTATAT-TATATAGGAAATATAATATAAATAATT-AT-ATTATAC 50338085 Query 228814 AAAACATTGACTACATTAAATATTAGTTCATGTAATATAAAAAATACtaatt 228865 || | || | || ||| ||||| || | || |||||||| ||||| ||||| Sbjct 50338086 AATAAATATAATATATT-AATATAAG-TAATATAATATAATAAATA-TAATT 50338134 Score = 84.2 bits (92), Expect = 3e-11 Identities = 282/410 (69%), Gaps = 43/410 (10%) Strand=Plus/Plus Query 228722 ATATTAAAAATACTAATTTTATAAATGATTTAGATAATTTGAAAGAATTAGATATATCTA 228781 ||||||| || | |||| ||| ||| || ||||| | ||| ||||| || ||| || Sbjct 50337754 ATATTAATAAAAACAATTATATTAATTAT----ATAATAT-AAATAATTATAT-TATATA 50337807 Query 228782 ACAATTATAATATAAAT-ATTTCATCAT-TACCAAAAACA--TTGACTACATTA-AATAT 228836 || |||||||||||| ||| || || || ||| | | | | || |||| | ||| Sbjct 50337808 GTAAATATAATATAAATAATTATATTATATAGTAAATATAATATAAATA-ATTATATTAT 50337866 Query 228837 -TAGTTCATGTAATATAAAAAATACtaattttataattaatttagataatttgaaagaat 228895 |||| || ||||||||| ||| | ||| |||| | ||| ||||| | ||| ||| Sbjct 50337867 ATAGTAAATATAATATAAATAATTAT-ATTATATAGTAAAT----ATAATAT-AAATAAT 50337920 Query 228896 tagatatatctaaaaattttaatataaat-atttCATCAT-TACCAAA------ATCATT 228947 || || ||| || || | |||||||||| ||| || || || ||| || | | Sbjct 50337921 TATAT-TATATAGGAAATATAATATAAATAATTATATTATATAGGAAATATAATATAAAT 50337979 Query 228948 GATTACATTAAATATTAATTCATGTTATATAAACCATACTAATTTTATAAATGATTTATA 229007 |||| |||| ||| || || | |||||| ||| | || ||||| | || ||| Sbjct 50337980 AATTATATTATATAGGAA---ATATAATATAA---ATAATTATATTATATAGGA--AATA 50338031 Query 229008 TAATTTGAAAGAATTAGATATATCTAACAATTATAATATAAATATTTCATCATTACCAAA 229067 |||| | ||| ||||| || ||| || || ||||||||||||| || || |||| || Sbjct 50338032 TAATAT-AAATAATTATAT-TATATAGGAAATATAATATAAATAATT-AT-ATTATACAA 50338087 Query 229068 TACATTAATTGAATTAAATATTAGTTCGTGTTATATAAAAAATACTAATT 229117 || || | | ||| ||||| || | | | |||||| ||||| ||||| Sbjct 50338088 TAAATATAATATATT-AATATAAG-TAATATAATATAATAAATA-TAATT 50338134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754874912688000