Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq20726 107 2e-18 seq45237 100 3e-16 seq38903 98.7 1e-15 seq37270 98.7 1e-15 seq2292 98.7 1e-15 seq28484 95.1 1e-14 seq45999 93.3 5e-14 seq42212 93.3 5e-14 seq17816 87.8 2e-12 >seq1 Length=229942017 Score = 134 bits (148), Expect = 2e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| |||| ||| ||| || || || ||||| |||| ||||| | | Sbjct 221679905 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGTGGCCA 221679964 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || ||||| ||||| || ||||||||||| | ||| | | ||||||| Sbjct 221679965 TCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTG 221680024 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| |||| | ||||| || | | ||||| || | || || || | ||||| Sbjct 221680025 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 221680083 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 |||||||||||| || ||||| |||||||| ||||| ||| || Sbjct 221680084 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGCG 221680126 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 89856328 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 89856269 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 89856268 TACTAACGAGGA 89856257 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| |||| ||||| | | || ||||||||| | || || || Sbjct 31920913 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGAGGCCATCTTCTAGCTGCATGCCTGCAAA 31920854 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||||| | | || ||||| ||| ||| || || | | Sbjct 31920853 GATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTCACATT 31920794 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 31920793 TTTGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 31920734 Query 43172 AAAGATTTGCATTTT 43186 |||||| |||||||| Sbjct 31920733 AAAGATCTGCATTTT 31920719 >seq20726 Length=174210431 Score = 107 bits (118), Expect = 2e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 28375080 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 28375021 Query 60124 TATACTACCGAGGATTGAA 60142 ||||||| |||||| |||| Sbjct 28375020 TATACTAACGAGGAATGAA 28375002 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| |||||||||||||||||| || |||||||||||| Sbjct 28480789 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGTGGGGATACTCACCACT 28480848 Query 60125 ATACTACCGAGGA 60137 |||||| | |||| Sbjct 28480849 ATACTAACAAGGA 28480861 >seq45237 Length=73212453 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 8242361 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 8242420 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 8242421 ATACTAACGAGGA 8242433 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||||| |||| |||| || ||| || || || ||||| |||| Sbjct 16727319 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 16727260 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 16727259 AGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 16727200 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| ||| || || | | | | ||||| || | ||||| Sbjct 16727199 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 16727140 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| ||||| || || || || || ||||| |||||||| || Sbjct 16727139 TCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACGAAGATCTGCATTTTGAC 16727087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | |||| |||| || |||||| || || ||||| |||| Sbjct 16727547 CCACCTCTCAGACGTAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 16727488 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 16727487 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGA 16727428 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || ||| ||| || || | | | | ||||| || | ||||| Sbjct 16727427 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 16727368 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 16727367 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16727321 >seq38903 Length=2460 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1928 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1869 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1868 TACTAACGAGGA 1857 >seq37270 Length=136387465 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 97210652 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 97210593 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 97210592 TACTAACGAGGA 97210581 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 127312949 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 127313008 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 127313009 TACTAACGAGGA 127313020 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 127326429 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 127326488 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 127326489 TACTAACGAGGA 127326500 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 99755080 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 99755021 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 99755020 ATACTAACGAGGA 99755008 >seq2292 Length=10672 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5746 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5805 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 5806 TACTAACGAGGA 5817 >seq28484 Length=135191526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 || ||||| |||| ||| || || || || ||||| || | ||||| | | || Sbjct 39947302 CAGCACCAGGTGCAGGGTGGGCTGTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATC 39947361 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || ||||| || || || ||||| || ||||||||||| | || | | |||||||| Sbjct 39947362 CTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGT- 39947420 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| |||| | |||| || | | ||||| || | || || || | ||||||| Sbjct 39947421 CTTGAATTTTGGCATTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 39947480 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||||||| || ||||| |||||||| ||||| Sbjct 39947481 TCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 39947514 Score = 93.3 bits (102), Expect = 5e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCG 60133 ||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| || Sbjct 69725026 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCAGGGATACTCACCACCATACTAACG 69725085 Query 60134 AGGA 60137 |||| Sbjct 69725086 AGGA 69725089 >seq45999 Length=10578 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||||| |||| ||||| || |||||| || || ||| | |||| Sbjct 9048 CCACCTCTCAGACGCAGGACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGCAGTCAGAA 8989 Query 43017 AGAGT-CCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| |||| | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 8988 AGAGTACCGC-CATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 8930 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || || ||| ||| || || | | | | ||||| || | ||||| Sbjct 8929 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 8870 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || ||||| || || ||||| || ||||| ||||| Sbjct 8869 TTCCAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8822 >seq42212 Length=99152023 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | || |||||||||||||||||| |||| || ||| || | || Sbjct 87790077 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 87790136 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 ||||||||||| ||||| || || |||| |||||| || | || | | ||||| || Sbjct 87790137 TTCTAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 87790196 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | ||| || | ||| || |||| |||||||| Sbjct 87790197 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 87790256 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || ||||| || || || | || || |||||||| Sbjct 87790257 CTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 87790292 >seq17816 Length=183952662 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGC-GGACATACTCACCACT 60124 ||||||| ||||||||||||||| ||||||||| |||||||| || ||||||||| || Sbjct 143933623 CTCCTCGTCAGGGAATCGAACCCCAGTCTCCCGCATGACAGGCGGGGGATACTCACCGCT 143933682 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 143933683 ATACTAACGAGGA 143933695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571377765049800