Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq42212 102 1e-16
seq20726 98.7 1e-15
seq25851 89.7 8e-13
seq49093 87.8 3e-12
seq45237 86.0 9e-12
seq30724 86.0 9e-12
seq36523 84.2 3e-11
>seq42212
Length=99152023
Score = 102 bits (112), Expect = 1e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| |||||||| || || | ||| | |||||| || ||| || ||||| || || ||
Sbjct 87790063 CCACCACTAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 87790121
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| |||| || || |||||||| |||| ||| |||||||| |||||
Sbjct 87790122 CAAAGTACGTCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 87790181
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 87790182 AATTCCTTCCTTATCCTG 87790199
>seq20726
Length=174210431
Score = 98.7 bits (108), Expect = 1e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||| | || || ||||| | |||||| || ||| || ||| | || || ||
Sbjct 115806506 CCACCACGAAGTTTCAACACAAAATGAAGAGTAGACTCCTTTTGA-ATACTGTAGTCAGA 115806448
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||
Sbjct 115806447 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 115806388
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 115806387 AATTCCTTCCTTATCCTG 115806370
>seq25851
Length=153482349
Score = 89.7 bits (98), Expect = 8e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || ||
Sbjct 83238644 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 83238586
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | || || |||||||| |||| ||| ||||||| |||||
Sbjct 83238585 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATGAGGAGG 83238526
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 83238525 AATTCCTTCCTTATCCTG 83238508
>seq49093
Length=62736349
Score = 87.8 bits (96), Expect = 3e-12
Identities = 103/137 (75%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 146052 CACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAA 146110
|||| | |||||| ||||| | ||| | |||||| || ||| || || || || || ||
Sbjct 12518323 CACCACGAAGTCTCAATACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGAC 12518265
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | | ||| || | ||| || | |||||| |||| ||||| |||||| ||||||
Sbjct 12518264 AAAGGACATCCATCCTCCAGTTGCTTGCTAGCAAAGATCAGTCTTTACTGATCAGGAGGA 12518205
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| ||||| ||
Sbjct 12518204 ATTCCTTCCTTATCCTG 12518188
>seq45237
Length=73212453
Score = 86.0 bits (94), Expect = 9e-12
Identities = 95/127 (75%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 146061 GTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGC 146120
|||| || || ||||| | |||||| ||||| ||||| || | || | ||| | |
Sbjct 10340766 GTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTACATC 10340707
Query 146121 TATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTT 146180
||| || | ||| || |||||||| ||| |||||||||||| ||||||||||||| |
Sbjct 10340706 CATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTTCT 10340647
Query 146181 TATCTTG 146187
|||| ||
Sbjct 10340646 TATCCTG 10340640
>seq30724
Length=133410057
Score = 86.0 bits (94), Expect = 9e-12
Identities = 216/307 (70%), Gaps = 26/307 (8%)
Strand=Plus/Minus
Query 112497 ATATAATATATTTTAAATCGAATACTTTAAATGATATTTTATATAAATTATGTTCT-GAA 112555
|||||||||||| || || ||| ||| || |||| ||||||| ||| || | ||
Sbjct 126236750 ATATAATATATTATATAT--TATATATTATATAATATATTATATATTATATATTATATAA 126236693
Query 112556 GATATTATA-ATTCCCGATGATAGttatataa---ataatttaaattata-atgatatgt 112610
|||||||| ||| || ||| |||||||| ||| |||| |||||| || | || |
Sbjct 126236692 TATATTATATATT----AT-ATA-TTATATAATATATATTTTATATTATATATTAGATAT 126236639
Query 112611 -ttatatctgaaataatgggatttaataaaattatgagacaatttataga-attatttaa 112668
||||| | | ||||| |||| || | |||| | | | | |||| | || | ||
Sbjct 126236638 AATATATATTATATAAT---ATTTTGTATATTTAT-ATATATTATATATATTTTGTATAT 126236583
Query 112669 aagaaatatttattatataagaaagaatatat-tattatttgttattataaattttattt 112727
| | ||| |||||||||| | | | ||||| | |||| | |||||||| ||| ||| |
Sbjct 126236582 ATTATATA-TTATTATATATTATATATTATATATTTTATATATTATTATATATTATATAT 126236524
Query 112728 tatctatattaattgtttatgtgggtattgtatatattaaaaagtatgaaaatttat-at 112786
||| |||||| ||| | ||| | |||| ||||| || | | ||| | ||| ||| ||
Sbjct 126236523 TATATATATT-ATTATATAT-TATATATTATATATTATATATAATAT-ATAATGTATAAT 126236467
Query 112787 ttatata 112793
|||||||
Sbjct 126236466 TTATATA 126236460
>seq36523
Length=132107971
Score = 84.2 bits (92), Expect = 3e-11
Identities = 191/269 (71%), Gaps = 30/269 (11%)
Strand=Plus/Minus
Query 112497 ATATAATATATTTTAAATCGAATA-CTTTAAATGATATTTTATATAAATTATGTTCTGAA 112555
|||||||||||||| || |||| | ||||| |||| || |||| ||||| | || |
Sbjct 74672581 ATATAATATATTTT-TATATAATATATATAAAT-ATATATTTTATATATTATATAATGTA 74672524
Query 112556 GATATTATA-ATTCCCGATGATAGttatataa---ataatttaaattataatgatatgtt 112611
|| ||||| ||| || ||| |||||||| ||||| || ||||||| |||| ||
Sbjct 74672523 TATTTTATATATT---TAT-ATA-TTATATAATATATAATATATATTATAA-AATATATT 74672470
Query 112612 tatatctgaaataatgggatttaata-aaattatgagaca-atttatagaattatttaa- 112668
||||| | | ||||| || ||||| | ||||| | | | ||||||| ||||| |||
Sbjct 74672469 TATATATTATATAAT---ATATAATATATATTATAAAATATATTTATA-TATTATATAAT 74672414
Query 112669 aaga-aatatttattatataagaaagaatatattattatttgt--------tattataaa 112719
|| | ||||| || ||| || | | | ||||| |||| | | |||||||||
Sbjct 74672413 AATATAATATATACTATCAAATATATATTATATATTTATATATAATATATATATTATAAA 74672354
Query 112720 ttttattttatctatatta-attgtttat 112747
| ||| |||| ||||||| ||| | |||
Sbjct 74672353 ATATATATTATATATATTATATTTTATAT 74672325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 742954488787200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |