Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq42212 102 1e-16 seq20726 98.7 1e-15 seq25851 89.7 8e-13 seq49093 87.8 3e-12 seq45237 86.0 9e-12 seq30724 86.0 9e-12 seq36523 84.2 3e-11 >seq42212 Length=99152023 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 87790063 CCACCACTAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 87790121 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| |||| || || |||||||| |||| ||| |||||||| ||||| Sbjct 87790122 CAAAGTACGTCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 87790181 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 87790182 AATTCCTTCCTTATCCTG 87790199 >seq20726 Length=174210431 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||| | || || ||||| | |||||| || ||| || ||| | || || || Sbjct 115806506 CCACCACGAAGTTTCAACACAAAATGAAGAGTAGACTCCTTTTGA-ATACTGTAGTCAGA 115806448 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 115806447 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 115806388 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 115806387 AATTCCTTCCTTATCCTG 115806370 >seq25851 Length=153482349 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 83238644 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 83238586 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | || || |||||||| |||| ||| ||||||| ||||| Sbjct 83238585 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATGAGGAGG 83238526 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 83238525 AATTCCTTCCTTATCCTG 83238508 >seq49093 Length=62736349 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 146052 CACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAA 146110 |||| | |||||| ||||| | ||| | |||||| || ||| || || || || || || Sbjct 12518323 CACCACGAAGTCTCAATACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGAC 12518265 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | ||| || | |||||| |||| ||||| |||||| |||||| Sbjct 12518264 AAAGGACATCCATCCTCCAGTTGCTTGCTAGCAAAGATCAGTCTTTACTGATCAGGAGGA 12518205 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 12518204 ATTCCTTCCTTATCCTG 12518188 >seq45237 Length=73212453 Score = 86.0 bits (94), Expect = 9e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 146061 GTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGC 146120 |||| || || ||||| | |||||| ||||| ||||| || | || | ||| | | Sbjct 10340766 GTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTACATC 10340707 Query 146121 TATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTT 146180 ||| || | ||| || |||||||| ||| |||||||||||| ||||||||||||| | Sbjct 10340706 CATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTTCT 10340647 Query 146181 TATCTTG 146187 |||| || Sbjct 10340646 TATCCTG 10340640 >seq30724 Length=133410057 Score = 86.0 bits (94), Expect = 9e-12 Identities = 216/307 (70%), Gaps = 26/307 (8%) Strand=Plus/Minus Query 112497 ATATAATATATTTTAAATCGAATACTTTAAATGATATTTTATATAAATTATGTTCT-GAA 112555 |||||||||||| || || ||| ||| || |||| ||||||| ||| || | || Sbjct 126236750 ATATAATATATTATATAT--TATATATTATATAATATATTATATATTATATATTATATAA 126236693 Query 112556 GATATTATA-ATTCCCGATGATAGttatataa---ataatttaaattata-atgatatgt 112610 |||||||| ||| || ||| |||||||| ||| |||| |||||| || | || | Sbjct 126236692 TATATTATATATT----AT-ATA-TTATATAATATATATTTTATATTATATATTAGATAT 126236639 Query 112611 -ttatatctgaaataatgggatttaataaaattatgagacaatttataga-attatttaa 112668 ||||| | | ||||| |||| || | |||| | | | | |||| | || | || Sbjct 126236638 AATATATATTATATAAT---ATTTTGTATATTTAT-ATATATTATATATATTTTGTATAT 126236583 Query 112669 aagaaatatttattatataagaaagaatatat-tattatttgttattataaattttattt 112727 | | ||| |||||||||| | | | ||||| | |||| | |||||||| ||| ||| | Sbjct 126236582 ATTATATA-TTATTATATATTATATATTATATATTTTATATATTATTATATATTATATAT 126236524 Query 112728 tatctatattaattgtttatgtgggtattgtatatattaaaaagtatgaaaatttat-at 112786 ||| |||||| ||| | ||| | |||| ||||| || | | ||| | ||| ||| || Sbjct 126236523 TATATATATT-ATTATATAT-TATATATTATATATTATATATAATAT-ATAATGTATAAT 126236467 Query 112787 ttatata 112793 ||||||| Sbjct 126236466 TTATATA 126236460 >seq36523 Length=132107971 Score = 84.2 bits (92), Expect = 3e-11 Identities = 191/269 (71%), Gaps = 30/269 (11%) Strand=Plus/Minus Query 112497 ATATAATATATTTTAAATCGAATA-CTTTAAATGATATTTTATATAAATTATGTTCTGAA 112555 |||||||||||||| || |||| | ||||| |||| || |||| ||||| | || | Sbjct 74672581 ATATAATATATTTT-TATATAATATATATAAAT-ATATATTTTATATATTATATAATGTA 74672524 Query 112556 GATATTATA-ATTCCCGATGATAGttatataa---ataatttaaattataatgatatgtt 112611 || ||||| ||| || ||| |||||||| ||||| || ||||||| |||| || Sbjct 74672523 TATTTTATATATT---TAT-ATA-TTATATAATATATAATATATATTATAA-AATATATT 74672470 Query 112612 tatatctgaaataatgggatttaata-aaattatgagaca-atttatagaattatttaa- 112668 ||||| | | ||||| || ||||| | ||||| | | | ||||||| ||||| ||| Sbjct 74672469 TATATATTATATAAT---ATATAATATATATTATAAAATATATTTATA-TATTATATAAT 74672414 Query 112669 aaga-aatatttattatataagaaagaatatattattatttgt--------tattataaa 112719 || | ||||| || ||| || | | | ||||| |||| | | ||||||||| Sbjct 74672413 AATATAATATATACTATCAAATATATATTATATATTTATATATAATATATATATTATAAA 74672354 Query 112720 ttttattttatctatatta-attgtttat 112747 | ||| |||| ||||||| ||| | ||| Sbjct 74672353 ATATATATTATATATATTATATTTTATAT 74672325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742954488787200