Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq51122 255 5e-63
seq25851 111 1e-19
seq5641 98.7 9e-16
seq1 89.7 5e-13
>seq51122
Length=156195299
Score = 255 bits (282), Expect = 5e-63
Identities = 615/921 (67%), Gaps = 21/921 (2%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||| || ||| ||||| | ||| ||| ||| || | |||||| ||| |||
Sbjct 44959129 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 44959188
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
| ||||| || | |||||| | |||||||| || || |||| | ||||||||| |
Sbjct 44959189 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44959243
Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064
||||||| ||||| || | | | | | || | |||| ||||| || |
Sbjct 44959244 CCATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44959303
Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124
||| || |||||||| || || || || ||||||| | | || ||||| || || | |
Sbjct 44959304 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCT 44959363
Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184
| ||||| | || || || | || | | |||||| | ||| || | || ||||| |
Sbjct 44959364 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTT 44959423
Query 16185 CTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACAAGCA 16240
|||| ||| | || | | || | ||| | | |||||| ||||| | ||||||
Sbjct 44959424 CTCTCACT-CTCTCCT---CCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44959479
Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300
|||||||| || || || || || || || || | || || ||||| || || || |||
Sbjct 44959480 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGC 44959539
Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360
|| |||||||||| || | ||| ||||| | ||||| ||||| |||||||| | |||
Sbjct 44959540 ATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCT 44959599
Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418
|| ||||| || || || || | || ||||| || || || ||| | | | ||||
Sbjct 44959600 TCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCC--CCAATCC 44959657
Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478
| ||||||| ||| || | || ||||| ||| | || || ||||| || |
Sbjct 44959658 AGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGA 44959717
Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538
| | | |||||||| |||| || ||||| || || || | |||||||||||| |
Sbjct 44959718 TAAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAG 44959777
Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598
|||| || || ||||| || || || || ||||| || || | ||||| | || || |
Sbjct 44959778 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 44959837
Query 16599 CT-TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657
|| | || | ||| | || | || ||||| || ||||| ||||| || ||||||||
Sbjct 44959838 CTATTTGACT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAG 44959896
Query 16658 AACGCAAGTATGTGTTTAATAAAAtttttttCGT-TATCTGAAAGTTTTAACCAGTCAGA 16716
|| | || | || ||||||| | | || | || | | || |||||
Sbjct 44959897 AAAACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATT-CCCAGTGCCG 44959955
Query 16717 AAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776
|| || || || | || |||||||| ||||| || ||||| | ||||| |||||
Sbjct 44959956 AATGTCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATA 44960015
Query 16777 CATTTTCCATATGTCTTCGTA 16797
||| | ||| || || | |||
Sbjct 44960016 CATCTGCCAGATATCATGGTA 44960036
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294
|||||||| | ||| || || || || || || || || | || || |||||||| ||
Sbjct 144142948 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144142889
Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354
|| ||||| |||||| |||| || | ||| ||||| ||||| ||||||||||||||
Sbjct 144142888 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144142829
Query 16355 ATACCTTCAACTGCGGCAAATGC 16377
||| ||| ||| |||||| ||
Sbjct 144142828 GTACTTTCCACTAGGGCAAAGGC 144142806
>seq25851
Length=153482349
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | || || |||||| | | | || |||||||| |
Sbjct 108786534 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 108786593
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| || ||||| || |||||||||||||||||||||||||| ||||| ||||
Sbjct 108786594 GCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 108786653
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||||||||||| ||
Sbjct 108786654 CCATAAAATCAAAAGGATTTTCTG 108786677
>seq5641
Length=113028656
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || |||||||| || || ||||| ||||||||||| ||
Sbjct 102562832 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 102562891
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| ||
Sbjct 102562892 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 102562951
Query 16379 ACCAATCGCTCACC 16392
|| | || |||||
Sbjct 102562952 ACAACACGTTCACC 102562965
>seq1
Length=229942017
Score = 89.7 bits (98), Expect = 5e-13
Identities = 218/324 (67%), Gaps = 11/324 (3%)
Strand=Plus/Minus
Query 16345 AGAA-AAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT--CT 16401
|||| ||||| |||||||| ||||| ||||| || || | | ||||| || || ||
Sbjct 89927029 AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCT 89926970
Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461
||| | | | || || | ||||||||||| || | | ||||| ||||
Sbjct 89926969 CTTTGTCCC--CAATACAACTCAAGGCCCAATTTGCCTTCT---TGACACAAGG--TGTT 89926917
Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521
|| || | || || | | | | |||||||| |||| || ||||| || || ||
Sbjct 89926916 -TCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAG 89926858
Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCT 16581
| |||||||||||| ||||| | || ||||| || || || || |||| || ||
Sbjct 89926857 GAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTG 89926798
Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641
||||| | || || ||||| | ||| | || | |||||||| || ||||| ||
Sbjct 89926797 GGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCC 89926738
Query 16642 ATCGCTAGCTGCAAAAAACGCAAG 16665
||| || |||||||| || || ||
Sbjct 89926737 ATCACTTGCTGCAAAGAAAGCCAG 89926714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462156241551000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |