Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq51122 255 5e-63 seq25851 111 1e-19 seq5641 98.7 9e-16 seq1 89.7 5e-13 >seq51122 Length=156195299 Score = 255 bits (282), Expect = 5e-63 Identities = 615/921 (67%), Gaps = 21/921 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||||| | ||| ||| ||| || | |||||| ||| ||| Sbjct 44959129 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 44959188 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||||| | |||||||| || || |||| | ||||||||| | Sbjct 44959189 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44959243 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064 ||||||| ||||| || | | | | | || | |||| ||||| || | Sbjct 44959244 CCATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44959303 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 ||| || |||||||| || || || || ||||||| | | || ||||| || || | | Sbjct 44959304 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCT 44959363 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184 | ||||| | || || || | || | | |||||| | ||| || | || ||||| | Sbjct 44959364 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTT 44959423 Query 16185 CTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACAAGCA 16240 |||| ||| | || | | || | ||| | | |||||| ||||| | |||||| Sbjct 44959424 CTCTCACT-CTCTCCT---CCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44959479 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || || || || | || || ||||| || || || ||| Sbjct 44959480 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGC 44959539 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || |||||||||| || | ||| ||||| | ||||| ||||| |||||||| | ||| Sbjct 44959540 ATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCT 44959599 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418 || ||||| || || || || | || ||||| || || || ||| | | | |||| Sbjct 44959600 TCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCC--CCAATCC 44959657 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | ||||||| ||| || | || ||||| ||| | || || ||||| || | Sbjct 44959658 AGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGA 44959717 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | |||||||| |||| || ||||| || || || | |||||||||||| | Sbjct 44959718 TAAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAG 44959777 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| || || ||||| || || || || ||||| || || | ||||| | || || | Sbjct 44959778 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 44959837 Query 16599 CT-TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657 || | || | ||| | || | || ||||| || ||||| ||||| || |||||||| Sbjct 44959838 CTATTTGACT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAG 44959896 Query 16658 AACGCAAGTATGTGTTTAATAAAAtttttttCGT-TATCTGAAAGTTTTAACCAGTCAGA 16716 || | || | || ||||||| | | || | || | | || ||||| Sbjct 44959897 AAAACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATT-CCCAGTGCCG 44959955 Query 16717 AAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 || || || || | || |||||||| ||||| || ||||| | ||||| ||||| Sbjct 44959956 AATGTCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATA 44960015 Query 16777 CATTTTCCATATGTCTTCGTA 16797 ||| | ||| || || | ||| Sbjct 44960016 CATCTGCCAGATATCATGGTA 44960036 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| | ||| || || || || || || || || | || || |||||||| || Sbjct 144142948 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144142889 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| |||||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 144142888 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144142829 Query 16355 ATACCTTCAACTGCGGCAAATGC 16377 ||| ||| ||| |||||| || Sbjct 144142828 GTACTTTCCACTAGGGCAAAGGC 144142806 >seq25851 Length=153482349 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || |||||| | | | || |||||||| | Sbjct 108786534 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 108786593 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 108786594 GCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 108786653 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 108786654 CCATAAAATCAAAAGGATTTTCTG 108786677 >seq5641 Length=113028656 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 102562832 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 102562891 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 102562892 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 102562951 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 102562952 ACAACACGTTCACC 102562965 >seq1 Length=229942017 Score = 89.7 bits (98), Expect = 5e-13 Identities = 218/324 (67%), Gaps = 11/324 (3%) Strand=Plus/Minus Query 16345 AGAA-AAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT--CT 16401 |||| ||||| |||||||| ||||| ||||| || || | | ||||| || || || Sbjct 89927029 AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCT 89926970 Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461 ||| | | | || || | ||||||||||| || | | ||||| |||| Sbjct 89926969 CTTTGTCCC--CAATACAACTCAAGGCCCAATTTGCCTTCT---TGACACAAGG--TGTT 89926917 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 || || | || || | | | | |||||||| |||| || ||||| || || || Sbjct 89926916 -TCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAG 89926858 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCT 16581 | |||||||||||| ||||| | || ||||| || || || || |||| || || Sbjct 89926857 GAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTG 89926798 Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 ||||| | || || ||||| | ||| | || | |||||||| || ||||| || Sbjct 89926797 GGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCC 89926738 Query 16642 ATCGCTAGCTGCAAAAAACGCAAG 16665 ||| || |||||||| || || || Sbjct 89926737 ATCACTTGCTGCAAAGAAAGCCAG 89926714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462156241551000