Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq42212 1541 0.0 seq28484 131 1e-25 >seq42212 Length=99152023 Score = 1541 bits (1708), Expect = 0.0 Identities = 1365/1696 (80%), Gaps = 51/1696 (3%) Strand=Plus/Plus Query 107098 GCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAA-----------GGGTCTT--A 107144 ||| ||||| || ||| ||||||||| |||||| |||| ||| ||| | Sbjct 56503412 GCTAGTTTGTAGGGTCACGTTACAGATCTCCATCAACAAACCAGATGTAAGGGGCTTCTA 56503471 Query 107145 GGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTGG 107204 |||||| ||| |||||||||||||||| | |||| || | ||| |||||| | ||| Sbjct 56503472 GGCAGGTCTTTACTGAGGATATTTGTCCAGGTAAGAAATACTT-TTTGCCATCAGTTTGG 56503530 Query 107205 AGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCC 107258 | |||||||||||||| |||| |||||||||||| | |||||||||||||||||| Sbjct 56503531 AATTGAACTTGATGTTTCTGGGAATGATTAGTTTGTAACTGGAGGCATTTTGTTCTGTCC 56503590 Query 107259 AAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATCTCCCATCCCAT 107314 |||| | ||||||||| |||| ||||||| | ||| |||| || | ||| | | Sbjct 56503591 AAGGGTGGTGTCCTCCTCCTCCTTCCCTGTGCTCGGTCTCCACCTG-TCACGCATTCTGT 56503649 Query 107315 GAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTG 107374 || |||| | |||||||| || || |||| | ||| | |||||||||||||||| Sbjct 56503650 GACAATGGTTCAGTGGAAGA-GA--CTCTGCCAGCAGCATTACTTGTGGGCCCTGGGCTG 56503706 Query 107375 CTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGA 107434 |||||||||||||||| ||| |||||| | || | |||| || || ||||| || Sbjct 56503707 CTATATGCTGCTGGCCACTGTGGCTCTGAAATTTGCTTTCAGATTGAAGTGTGACTCTGA 56503766 Query 107435 TTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAA 107494 ||||| ||||||||||||||| | || || ||| |||||||| | | |||||||| Sbjct 56503767 CCACTTGGGTCTGGAGTCCAGGGAATCTCAAAGCCAGTACTGTAGGAATGTCTTGTACAA 56503826 Query 107495 TAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCA 107554 | |||||| ||||| |||||||| || ||||||||||| ||| |||| ||||||||||| Sbjct 56503827 TTTCCTGAAACTGCCGGCAAAGAGGTCTATCAACTGTTCAGGGGTCACCCGAGGGGACCA 56503886 Query 107555 GGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCT 107614 || |||||| | ||||| | || | |||||||| || ||||| ||||| |||| | Sbjct 56503887 AGAGGCAGTGTTGCAGGCTATTCTGAATAACCTGGAGGTCAAGAAGAAGCGAGAGCCTTT 56503946 Query 107615 CACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAA 107674 ||| | |||| | |||||| | | ||||||||||||||||||||||||||| ||||||| Sbjct 56503947 CACAGACACCCACTACCTCTCCCTCACCAGAGACTGTGAGCGCTTCAAGGCCAAAAGGAA 56504006 Query 107675 GTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||||||||||||||||||| ||||||||| | || ||||| ||||| ||||| ||||| Sbjct 56504007 GTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCATACTCTATGGT 56504066 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | | || ||||||||||||||||||||| |||| |||||||| ||||||||||||||||| Sbjct 56504067 GATTCACGAGAAGATTGAAAACTTTGAAAGGCTACTGCGAGCTGTGTATGCCCCTCAGAA 56504126 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||||||||| |||| ||||||| |||||||||||| |||||||||||||| ||||| || Sbjct 56504127 CATATACTGCATCCATGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAAGC 56504186 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 |||||||| |||||||| ||||||||||| ||||||||| |||| | |||||||||||| Sbjct 56504187 AATTATTTCATGCTTCCCAAATGTCTTCATAGCCAGTAAGCTGGTTCGGGTGGTTTATGC 56504246 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 56504247 CTCCTGGTCCAGGGTGCAAGCTGACCTCAACTGCATGGAAGACTTGCTCCAGAGCTCAGT 56504306 Query 107975 GCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGA 108034 ||||||||| ||||| |||||||| || ||||| ||||| || ||||||| |||||| || Sbjct 56504307 GCCATGGAAATACTTCCTGAATACGTGTGGGACGGACTTTCCTATAAAGAGCAATGCGGA 56504366 Query 108035 GATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC 108094 |||||| | ||| |||||||||||||| || | ||| || |||||| | ||||||||| | Sbjct 56504367 GATGGTACAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGACAGAGGTACCTCC 56504426 Query 108095 TGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACCC 108151 | || |||| ||| ||||||||||| | || |||| |||| ||||||| | |||| Sbjct 56504427 TAAGCACAAAGAAACCCGCTGGAAATATCACTTTGAGGTAGTGAGAGACACATTATACCT 56504486 Query 108152 TACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTA 108211 |||| ||||| |||||| ||||||||| |||||||| | ||||| ||||||||||| || Sbjct 56504487 AACCAACAAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACAGGGAATGCGTA 56504546 Query 108212 TTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACT 108271 | ||||||| || |||| |||||||||||||| || | ||||||||||||||| ||| Sbjct 56504547 TATTGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAACCCTAAATCCCAACAACT 56504606 Query 108272 GGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG 108331 | |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 56504607 GATTGAATGGGTAAAAGACACCTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGCG 56504666 Query 108332 TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 || | ||||||||||||||||||||| | |||||||||||| |||||||||||||||| Sbjct 56504667 GGCACGGTGGATGCCTGGCTCTGTTCCCAACCACCCCAAGTACGACATCTCAGACATGAC 56504726 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 | | || |||||||| |||||||||||| | || |||||||| ||| | ||| || || Sbjct 56504727 TTCTATTGCCAGGCTGGTCAAGTGGCAGGATCATGAGGGAGACATCAATAAGGGTGCTCC 56504786 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 |||||| ||||||||||||||||| | | |||| ||||| |||| || | |||||| | Sbjct 56504787 TTATGCTCCCTGCTCTGGAATCCACCAGCGGGCTATCTGTGTTTATGGCACTGGGGACTT 56504846 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 | | ||||| || || ||||||||||| ||||| |||||||||||||| | ||| ||||| Sbjct 56504847 GCATTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATGA 56504906 Query 108572 TAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACT 108631 ||| | || |||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 56504907 TAATGCTCTTCAGTGCTTAGAAGAGTACCTACGTTATAAGGCCATCTACGGGACTGAACT 56504966 Query 108632 TTGAG-----CT------GCA-------CTGT-GGGCCAGGGACTGTGCCAACATGCCCA 108672 ||||| || ||| |||| |||| | | ||| | ||||| | || Sbjct 56504967 TTGAGACACACTATGAGAGCATTGGTACCTGTGGGGCAACAGCATGTACAAACATTCTCA 56505026 Query 108673 GGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCA 108732 | | | |||| || |||| ||||||| ||| |||| | || ||| | |||||||| | Sbjct 56505027 GAACTTGCTGGGACAGTGT-GGGTGGGAGACCAGGGATTTGCAATTCGTGGCATCCTTTA 56505085 Query 108733 GGGTCAGAGGGCTGCT 108748 || | ||||||||||| Sbjct 56505086 GGATAAGAGGGCTGCT 56505101 >seq28484 Length=135191526 Score = 131 bits (144), Expect = 1e-25 Identities = 570/887 (64%), Gaps = 31/887 (3%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | ||| Sbjct 71459368 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 71459427 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||||||| | ||| | ||| |||||||| | || || | Sbjct 71459428 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 71459487 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | || ||| |||| Sbjct 71459488 CATGTGGACACAAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATCGCTTCC 71459544 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || || |||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 71459545 TGTTTTAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 71459604 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCA--TGG 107981 | || || |||||||| ||||| ||| | ||| ||| | | | ||||| | ||| Sbjct 71459605 CGGGTTCAGGCTGACCTCAACTGCATGAAGGAC---CTCTATGCAATGAGTGCAAACTGG 71459661 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || || || || || ||||| || || ||| Sbjct 71459662 AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTC 71459721 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGAG 108098 | |||||| |||| | ||| | |||| |||| | ||| | || || | Sbjct 71459722 AGGAAGCTCAAGTTGTTAATGGGAGAAAACAACCTGGAAACGGAGAGGATGCCATCCCAT 71459781 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTG-TACCCTAC-CA 108156 ||| || | | ||||| | || |||||||| | | | || | || || Sbjct 71459782 ---AAAGAAGAAAGGTGGAAGAAGCGGTATGAGGTCGTTAATGGAAAGCTAACAAACACA 71459838 Query 108157 GCAAGATGAAGGAC----CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTAT 108212 | | | || ||||| | || | ||| | || | || | |||||| Sbjct 71459839 GGGACTGTCAAAACGCTTCCTCCACTCGAAAC---ACCTCTTTTTTCTGGCAGTGCCTAC 71459895 Query 108213 TTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTG 108272 || |||| | | | | | ||| |||| || | || ||| ||||| | Sbjct 71459896 TTCGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAAAATCCAAAAGTTT 71459955 Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332 | || |||| ||||||| |||||||| || || | |||||||||||| | || | Sbjct 71459956 ATGGAGTGGGCACAAGACACATATAGCCCTGATGAGTATCTCTGGGCCACCATCCAAAGG 71460015 Query 108333 GCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCC-AAGTATCACATCTCAGACATGA 108390 ||| || | | || ||||| | || |||| || |||||| | | || |||||| Sbjct 71460016 ATTCC-TGAAGTCCCGGGCTCACTCTCT-GCCAGCCATAAGTATGATTTGTCTGACATGC 71460073 Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGC 108450 || | |||||| | ||||||||||||||| ||||| ||||| || ||| || | Sbjct 71460074 AAGCAGTTGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTCCAAGGGTGCTC 71460133 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 | || |||||||| |||| ||||| | | | | ||||||| ||| || || ||| Sbjct 71460134 CCTACCCACCCTGCGATGGAGTCCATGTGCGCTCAGTGTGCATTTTCGGAGCTGGTGACT 71460193 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || ||||||| || | || || ||| | || || || ||||||||| Sbjct 71460194 TGAACTGGATGCTGCGCAAACACCACTTGTTTGCCAATAAGTTTGAC 71460240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348007613092590