Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq51122 297 2e-75
seq5641 120 3e-22
seq1 120 3e-22
>seq51122
Length=156195299
Score = 297 bits (328), Expect = 2e-75
Identities = 536/776 (69%), Gaps = 11/776 (1%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914
|| || ||| ||||||| | |||| ||| || | || | | || | || ||||| |
Sbjct 44959131 TAGAAGTCAGCATCTAAGGTAAAAGAATTCTC-TGTTGGACTTGACACCACTCCCATCCT 44959189
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | ||||| | |||||||||||||| ||| |||||| ||||| ||
Sbjct 44959190 CTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTC 44959244
Query 13975 CATAAAATCAAATGGATT-TGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 14033
|||||| |||||||| | | | | ||| ||| | | |||| ||||| | | |
Sbjct 44959245 CATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAGTTCCAGCATAA 44959303
Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 14093
||| || || | |||||||| ||||| ||||| | | |||||||| || || || |
Sbjct 44959304 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCT 44959363
Query 14094 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153
| ||||| | | ||| | ||||| | |||||| ||||| | | | || ||
Sbjct 44959364 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTT 44959423
Query 14154 TCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 14213
| | | || | || | | | || ||||| || || || || |||||||
Sbjct 44959424 CTCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44959483
Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273
|||| || | ||||||||||| ||||||||||| || ||||| || | || ||||||
Sbjct 44959484 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44959543
Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333
||||||||| || | ||| ||||| | || || || ||||||||||| | || || |
Sbjct 44959544 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTA 44959603
Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393
||||||| || |||| | ||||| ||| | | || | ||||| | |||||
Sbjct 44959604 CTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44959663
Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT 14453
||||| || | || || || | | || ||| |||||||| ||||| || | | ||
Sbjct 44959664 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGATAAATT 44959723
Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513
|| | ||||| | | | ||||| || |||||||| | |||||||||||||| ||||
Sbjct 44959724 CCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44959783
Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC-CTCT 14572
|||||||||| || || || || ||||| ||||| | ||||||| || || | |
Sbjct 44959784 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44959843
Query 14573 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628
|| | ||||| || ||||||||||||| ||||| |||||||| |||||||| ||
Sbjct 44959844 GACT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44959898
Score = 105 bits (116), Expect = 6e-18
Identities = 300/464 (65%), Gaps = 33/464 (7%)
Strand=Plus/Minus
Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263
|| ||||| | ||| || | |||||||| || ||||||||||| || |||||||| |
Sbjct 144142948 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144142889
Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323
|| ||||||| |||| |||| || | ||| ||||| || || || || ||||||||
Sbjct 144142888 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144142829
Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383
| | || ||| ||||| ||| | ||||||||| | | | |||||||
Sbjct 144142828 GTACTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 144142769
Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443
||||| |||| | | || || || | | | |||||||||||| |||||
Sbjct 144142768 ATCCAACAGAAGACCCAACCTGCCTTCTTCTTGA-CACAGGCATTGTTTCAATGGCATTG 144142710
Query 14444 AATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502
|| | | |||| | ||||| || ||| || ||||| |||||||| | ||| ||
Sbjct 144142709 AAGAGAAATTCCCTTTCTTTGTTATCTTTAA---TATGTGTCAATAAGGAGATTATTTAT 144142653
Query 14503 TTC--------------------------AGAGTGTATGTTTTCCATAGCTATCTGAAAA 14536
||| ||| ||||||||||| ||||| || || ||
Sbjct 144142652 TTCTCCTTATTGAATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGGAAT 144142593
Query 14537 CCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTT 14596
||||| || || | ||||| || || ||| |||| ||| |||| |||
Sbjct 144142592 CCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTT 144142533
Query 14597 TCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATG 14638
|||| | ||| ||||||| |||||||| || ||| ||||||
Sbjct 144142532 TCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAGAATATG 144142489
>seq5641
Length=113028656
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 102562830 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 102562889
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||| | || || || ||||||||||| || || || ||||||||||| |
Sbjct 102562890 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 102562949
Query 14346 CTATTAATCGTTCTCC 14361
||| | ||||| ||
Sbjct 102562950 CTACAACACGTTCACC 102562965
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 102560508 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 102560566
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 102560567 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 102560626
Query 13975 CATAAAATCAAATGGATT 13992
|||||| |||||||| ||
Sbjct 102560627 CATAAAGTCAAATGGGTT 102560644
Score = 86.0 bits (94), Expect = 6e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533
||||| || |||||||| | |||||||||||||| |||||||||||||| || || ||
Sbjct 102565230 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 102565289
Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558
|| ||||| ||||| | |||||||
Sbjct 102565290 AAGCCATAGAAACAGCGGGCTTCTG 102565314
>seq1
Length=229942017
Score = 120 bits (132), Expect = 3e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 14428 TGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14487
||||||||| | || || | | |||| | ||||| | | | ||||| || |||||
Sbjct 89926920 TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAAT 89926861
Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547
||| | |||||||||||||| ||| |||||||||| || || || || |||| |||||
Sbjct 89926860 AAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACA 89926801
Query 14548 TCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607
||||||| || || ||| | ||||| || |||| |||||||| |||||
Sbjct 89926800 GTGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTAT 89926741
Query 14608 ACCATCACTAGCTGCAAAAAATGCCA 14633
|||||||| |||||||| || ||||
Sbjct 89926740 CCCATCACTTGCTGCAAAGAAAGCCA 89926715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 481974585793800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |