Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq45237 95.1 9e-15 seq45999 91.5 1e-13 seq1 91.5 1e-13 seq37270 86.0 5e-12 >seq45237 Length=73212453 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 16727304 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCT 16727245 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||||||| Sbjct 16727244 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCC 16727185 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| |||||| |||| ||||||| | Sbjct 16727184 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 16727125 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || | ||||| || || || |||||||| Sbjct 16727124 TTGCCAGTAAGGGTTTTCACGAAGATCTGCATTTT 16727090 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||| | | || || |||| Sbjct 16727532 AGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 16727473 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | |||||| ||||| Sbjct 16727472 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCC 16727413 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| |||||| || | ||||||| | Sbjct 16727412 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 16727353 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || || || ||||| Sbjct 16727352 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16727321 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 16727760 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 16727701 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||| ||||| Sbjct 16727700 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCT 16727641 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| |||||| || | ||||||| | Sbjct 16727640 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 16727581 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || || || ||||| Sbjct 16727580 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16727549 >seq45999 Length=10578 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 8805 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 8746 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| | ||||| ||| |||| || || || || || ||| | | |||| ||||| Sbjct 8745 TCCAGCTACTTGCCTGCAAAGATGAGCCTCTGCTGGTCGCGGGGAATGTCTTCTTTATCC 8686 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | | | | ||||||| |||||| ||| | ||||||| | Sbjct 8685 TGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCTAGGGTGATGGTC 8626 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||| | ||||| || || || |||||||| Sbjct 8625 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 8591 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 9261 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 9202 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || ||||| ||| | |||||| ||||| Sbjct 9201 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGGGGATGCCTTCTTTATCC 9142 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | | | ||||||| |||||| || | ||| ||| | Sbjct 9141 TGGATCT-TGGCTTTCACATTTTTGATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGT 9083 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || ||||| || ||||| Sbjct 9082 CTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 9050 >seq1 Length=229942017 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || || ||||| || ||||||||||| | | || | | ||| ||| Sbjct 221679911 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGTGGCCATCCTCC 221679970 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | |||||||| ||| | || || | || || || || | || ||||| || | Sbjct 221679971 AGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGA 221680030 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || ||||| | ||| ||||||| ||||||| |||| ||||||| |||| Sbjct 221680031 ATTT-TGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTT 221680089 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||| || | || || ||||| || ||||| ||| Sbjct 221680090 GCCCGTGAGGGTCTTCACAAAGATCTGCATGTTT 221680123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || || ||||| || ||||||||||| | | || | |||||| Sbjct 31920930 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGAGGCCATCTTCT 31920871 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234 | || |||| ||| |||| || || || || || | | | |||||||||||| || Sbjct 31920870 AGCTGCATGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGG 31920811 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||| | ||| || | | | ||||||| |||||| |||| ||||||| | | Sbjct 31920810 ATATTGG--CCTTCACATTTTTGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCT 31920753 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||| |||| || || ||||| || |||||||| Sbjct 31920752 TGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 31920719 >seq37270 Length=136387465 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || || |||| Sbjct 127297142 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 127297201 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| | || | || || || || || | |||||||||||| Sbjct 127297202 TCCAGCTGTTTCCCGGCAAAAATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCT 127297261 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||||| |||||| || | ||||||| | Sbjct 127297262 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 127297321 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || || || || ||||| Sbjct 127297322 TTACCAGTCAGGGTCTTCACGAAGATCTGCAT 127297353 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || || ||||| || ||||||||||| | | || | ||| Sbjct 127297825 AAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATC 127297884 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || || |||||| |||| | ||||| ||||| || | ||| ||||| || Sbjct 127297885 TTCCAGCTGCTTTCCCGCAAAGATCAACCTTTGCTGATCAGGAGGAATGCCCTCCTTGTC 127297944 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 || | |||| ||||| | ||| ||||||| |||||| |||| ||| ||| Sbjct 127297945 CTGGATCT-TTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTAATGG 127298003 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| |||| || || || || || ||||| Sbjct 127298004 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 127298037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || || |||| Sbjct 127297370 AGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 127297429 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| | || || || || || | ||||||||| || Sbjct 127297430 TCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 127297489 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||| ||||| | | | ||||||| ||||||| |||| |||||| | Sbjct 127297490 TGGATCT-TTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATAGT 127297548 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | ||| || || || || ||||| Sbjct 127297549 CTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 127297581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379059508003575