Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq51122 428 6e-115 seq1 165 1e-35 seq5641 120 4e-22 seq36523 105 8e-18 seq37270 102 1e-16 seq25851 102 1e-16 >seq51122 Length=156195299 Score = 428 bits (474), Expect = 6e-115 Identities = 660/938 (70%), Gaps = 19/938 (2%) Strand=Plus/Plus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 33291 |||| |||||| ||||||| | |||| ||| ||| | || |||| |||||||| Sbjct 44959129 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 44959188 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | || || || || || | | || || || ||||| |||| | ||| ||||| | Sbjct 44959189 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44959243 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCA 33411 |||| || ||||| || | || | ||| || |||| |||| ||| || | Sbjct 44959244 CCATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44959303 Query 33412 ATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 33471 ||| ||||| || || || || ||| ||||| | | |||||||| || ||||| | Sbjct 44959304 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCT 44959363 Query 33472 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAA 33531 | || || | ||| | || || ||||| ||||| || || ||||| | || || Sbjct 44959364 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTT 44959423 Query 33532 ATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAAT 33591 ||| || | || || | | |||| | ||||| |||||||| || || |||| Sbjct 44959424 CTCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44959483 Query 33592 CGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTA 33651 | ||||| | |||||| ||||| ||||| | ||| || ||||||||||| || ||||| Sbjct 44959484 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44959543 Query 33652 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTA 33711 | || || || || ||||| ||||| || || || || ||||||||||||| ||||||| Sbjct 44959544 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTA 44959603 Query 33712 CTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTT 33768 ||||||| ||||| | || | || ||||| | | | |||| ||||| Sbjct 44959604 CTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44959663 Query 33769 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33828 |||||||| |||||||| || ||||||||||||||||| |||||||| |||| | | | Sbjct 44959664 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGATAAATT 44959723 Query 33829 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33888 |||| || |||||| | ||||| || || | |||||||||||||| ||||| | Sbjct 44959724 CCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44959783 Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 33948 ||||||| ||||| || || || || |||||||| | || || |||||||| ||| | Sbjct 44959784 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44959843 Query 33949 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 || |||||| || | ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct 44959844 GACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44959903 Query 34009 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----ATA 34064 ||||| |||||||| | | || || || | || ||||| || || || Sbjct 44959904 GAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGCCGAATG 44959959 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 34124 || || || | ||||| |||||| ||||| || || ||||| ||||| |||||||| Sbjct 44959960 TCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 44960019 Query 34125 TTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | |||||| ||||| || | ||| ||||| || ||||| Sbjct 44960020 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44960057 >seq1 Length=229942017 Score = 165 bits (182), Expect = 1e-35 Identities = 238/334 (71%), Gaps = 9/334 (3%) Strand=Plus/Minus Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTG 33752 |||||||| ||||| |||||||||||||| | || | || ||||| | | | || Sbjct 89927024 AAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTTTG 89926965 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 || || || | ||||||| |||||||| |||||||| ||||| ||| Sbjct 89926964 TCCCCAATACAACTCAAGGCCCAATTTGCCTTCTTG---ACACAAGGT---GTTTCAATG 89926911 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 | || |||||| | | |||| || |||||| | ||||| || || | |||||| Sbjct 89926910 GTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTA 89926851 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 |||||||| ||||| ||||||| ||||| || || || | |||||||| || || Sbjct 89926850 TACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGGCTTCT 89926791 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 |||||||| |||||| | |||||| || | || |||||||| ||||| |||||||| Sbjct 89926790 GTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCCATCACTT 89926731 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT 34026 |||||||| || |||| ||| | |||||||| Sbjct 89926730 GCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 89926697 >seq5641 Length=113028656 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 102562830 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 102562889 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 102562890 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 102562949 Query 33724 C 33724 | Sbjct 102562950 C 102562950 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 102565223 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 102565282 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 102565283 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 102565342 >seq36523 Length=132107971 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 66609841 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 66609900 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 66609901 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 66609960 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 66609961 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 66610011 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 66612661 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66612720 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 66612721 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 66612780 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 66612781 CTGTTTCTTATACCATA 66612797 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| |||||||||||||| | || |||||||| | | Sbjct 66623538 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 66623597 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 66623598 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 66623657 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 66623658 AGGCTCCAGGTAAATAGC 66623675 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63566 ||||||| ||| | || |||||| ||| | | | ||| ||||| || || ||| Sbjct 66627565 ATATAGCTGCCAGTAGCCCGAATACAACTCACAGCAACACCAATTCCTCCAGCAGACTTA 66627624 Query 63567 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626 || || ||||| ||| | |||| |||||||| |||||||| ||||| ||||| |||| Sbjct 66627625 GAAATCAATGCACATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCATCTTTCATA 66627684 Query 63627 TTAAGTAGAAAACAGCTA 63644 | || |||||||||||| Sbjct 66627685 CTCAGAAGAAAACAGCTA 66627702 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || || ||||| || | || || || || | ||| || || || | || || | Sbjct 66617879 CATAGGTTTCGTATGGGCCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGAGCGCCAT 66617938 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||||| |||||| || || ||||| | || ||||| || | Sbjct 66617939 AATAAATAGTTTCAAAGATCTGCTTATTCAGTAACTGGGCTTCTGCACTCTCAAAAGGGT 66617998 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | || ||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 66617999 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGC 66618058 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 66618059 GTTTATTTGA 66618068 >seq37270 Length=136387465 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| || | ||||||||||| |||| ||| |||| ||| Sbjct 66245076 GTTACTTTCTATGATGTATATATTATTCTGCAAGCTTTCATACTGACGACTACAGTATTT 66245017 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 ||| | |||||| | |||||||||||| ||||| |||||||| ||| ||| | |||| Sbjct 66245016 TTTGGTTTGACTATGTATACTCTACAATCTAAGAGGGATTTCAGCAAATTTGGAGCAGG 66244958 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 188376 TCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATC 188435 |||||||| | || |||||||| || ||||||||| |||||||||| ||||||| || | Sbjct 66251456 TCGGATCTCTGGGTTTGATTTTTGCGTTGACTTTAAACAGACATAAGTATCCCCTTAACC 66251397 Query 188436 TGTACCTACTTTGTGGATTT 188455 |||||||||||| ||||||| Sbjct 66251396 TGTACCTACTTTTTGGATTT 66251377 Score = 89.7 bits (98), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 ||||||| |||||||||||||||||||||| |||| ||||| || ||||||||||||| Sbjct 66269573 GCTCCTCGATCGAGGACGACTTCAACTATGGCAGCAGCGTGGCCTCCGCCAGCGTGCACA 66269514 Query 188233 TACGAATGG 188241 | ||||||| Sbjct 66269513 TCCGAATGG 66269505 >seq25851 Length=153482349 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | ||| || Sbjct 108797162 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 108797221 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| | ||||||||| ||||||||||| Sbjct 108797222 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGGC 108797280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629333152174800