Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq51122 277 2e-69 seq5641 116 3e-21 seq25851 111 1e-19 seq36523 93.3 4e-14 seq1 93.3 4e-14 >seq51122 Length=156195299 Score = 277 bits (306), Expect = 2e-69 Identities = 614/915 (67%), Gaps = 26/915 (3%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367 ||||||| | | ||| | ||| |||||| | ||||| || | |||| | || || Sbjct 44959157 ATTCTCTGTTGGACTTGACACCACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAA 44959216 Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427 || |||||||| | ||||| |||| |||||||||| ||| || | | ||| Sbjct 44959217 GAAGTTAGTCTTTC-----AGTGAAATATTCTCCATAAAGTCAAATGGGCTCTCTACTCC 44959271 Query 11428 GAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTG 11487 ||| || || | |||| | || | | ||| ||||| || || || || || || Sbjct 44959272 GAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTG 44959331 Query 11488 AGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTC 11547 ||||| | |||||||| || || || | ||| || | || | || | || || Sbjct 44959332 CTTCATTAGAGCGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTC 44959391 Query 11548 CTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACT---TCCTTAGATGGTGG 11604 || |||||| | ||| |||| || ||||| | | ||| |||| |||| | Sbjct 44959392 CTGTTCTATCTGAACAGCATTGATAATTATTTC---TCTCACTCTCTCCTCCGATGTTTT 44959448 Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 |||| | ||||| ||||| || || ||||||||||| |||||||| || ||||| || Sbjct 44959449 GTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 44959508 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 || |||||||| ||||| || | || |||||| ||||||||| || | ||| ||||| Sbjct 44959509 AATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATAT 44959568 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | ||||| ||||| |||||||| | || || || || || || ||||| || | ||| Sbjct 44959569 CGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTACTGCAGCGAAGGCTACAACACGTTC 44959628 Query 11785 TCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 ||||| || ||| ||| ||||| ||||||||| || ||||| || || Sbjct 44959629 ACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGAC 44959688 Query 11842 GCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACA 11899 || ||| ||||| || || || | |||||| | ||||| | |||| | | Sbjct 44959689 ACAAGGCATCGTTTCAATGGCATTGAAGATAAATTC--CCTTTCTTTGGGATCTTTGATG 44959746 Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || || | | |||||||||||| ||||| || |||||||| || ||||| || Sbjct 44959747 TAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAG 44959806 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||||||||||| || || |||| | ||| || | ||||| ||| | ||||| Sbjct 44959807 CCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGACTAAATCGCTCCACCAAATTT 44959866 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 |||||||| || |||||||| | |||||| || | || | ||| |||||| | | | Sbjct 44959867 TCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATCTCTC 44959926 Query 12080 TC----GTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTC 12135 || | ||| || | ||||| | | || || || | || || ||||| Sbjct 44959927 TCCTCGGGCTTCAGGGA----TTCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCTTC 44959982 Query 12136 AACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195 |||||| || ||| | | | |||||||| | |||||||||||| |||| || Sbjct 44959983 CGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGAT 44960042 Query 12196 AGGGAAAATAACGAA 12210 ||||| || || || Sbjct 44960043 GGGGAAGATGACAAA 44960057 Score = 131 bits (144), Expect = 2e-25 Identities = 323/489 (66%), Gaps = 42/489 (9%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| |||||||| | Sbjct 144142948 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144142889 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| |||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 144142888 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144142829 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803 | | ||||| ||||| ||| | || | |||||||| || | ||||| | | Sbjct 144142828 GTACTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 144142769 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| | ||||| | || ||||| || || || ||||||||| || || Sbjct 144142768 ---ATCCAACAGAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCA 144142713 Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | | |||| | ||||| | |||||| ||| |||||| || || | | | ||| Sbjct 144142712 TTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATATGTGTCAATAAGGAGATTAT 144142657 Query 11922 ACATTTCT--------------------------GAATGAATATTTTCCATAGCTATTTG 11955 |||||| ||||| || ||||| ||||| ||||| Sbjct 144142656 TTATTTCTCCTTATTGAATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTG 144142597 Query 11956 AAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAA 12015 ||||||||||| || | |||| | ||| || || | |||| |||| | || Sbjct 144142596 GAATCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAA 144142537 Query 12016 ATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTA 12075 || |||| || || ||||||| | |||||| || || || ||||| |||||| | Sbjct 144142536 GTTTTCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATG 144142477 Query 12076 TTTTTCGTC 12084 | |||| || Sbjct 144142476 TCTTTCCTC 144142468 >seq5641 Length=113028656 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||||||||||||||| | || ||||||| ||||||||| || Sbjct 102562832 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 102562891 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| ||||| |||||||| || || ||||| || ||||| ||| Sbjct 102562892 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 102562951 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 102562952 ACAACACGTTCACC 102562965 >seq25851 Length=153482349 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 108797160 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 108797219 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| | ||| || ||||| ||||| | Sbjct 108797220 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 108797279 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 108797280 CCACCACTCTTTCCCC 108797295 >seq36523 Length=132107971 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 66612661 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66612720 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 66612721 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 66612780 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 66612781 CTGTTTCTTATACCAT 66612796 >seq1 Length=229942017 Score = 93.3 bits (102), Expect = 4e-14 Identities = 219/324 (68%), Gaps = 14/324 (4%) Strand=Plus/Minus Query 11740 AGAA-AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCT 11795 |||| ||||| || || ||||| || ||||| ||||| || | ||| ||||| || ||| Sbjct 89927029 AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCT 89926970 Query 11796 TGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTT 11855 ||| || || | |||||||| || ||||| || || ||||| Sbjct 89926969 CTTTGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCTTG---ACACAAGG---TGTTT 89926916 Query 11856 CTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTATTAA 11913 | || | ||| || | | ||| ||||| | |||| ||| || || || || | Sbjct 89926915 CAATGGTGTTGAAGAGAA--ATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAG 89926858 Query 11914 TAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCG 11973 | |||||||||||| ||||| | |||||||| || ||||| || |||||||||| | Sbjct 89926857 GAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTG 89926798 Query 11974 TGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACC 12033 || |||| | ||| || || ||||| ||| | || || |||||||| || || Sbjct 89926797 GGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCC 89926738 Query 12034 ATCACTAGATGCAAAAAATGCTAG 12057 |||||| | |||||| || || || Sbjct 89926737 ATCACTTGCTGCAAAGAAAGCCAG 89926714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468164416580400