Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq51122 277 2e-69
seq5641 116 3e-21
seq25851 111 1e-19
seq36523 93.3 4e-14
seq1 93.3 4e-14
>seq51122
Length=156195299
Score = 277 bits (306), Expect = 2e-69
Identities = 614/915 (67%), Gaps = 26/915 (3%)
Strand=Plus/Plus
Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367
||||||| | | ||| | ||| |||||| | ||||| || | |||| | || ||
Sbjct 44959157 ATTCTCTGTTGGACTTGACACCACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAA 44959216
Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427
|| |||||||| | ||||| |||| |||||||||| ||| || | | |||
Sbjct 44959217 GAAGTTAGTCTTTC-----AGTGAAATATTCTCCATAAAGTCAAATGGGCTCTCTACTCC 44959271
Query 11428 GAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTG 11487
||| || || | |||| | || | | ||| ||||| || || || || || ||
Sbjct 44959272 GAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTG 44959331
Query 11488 AGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTC 11547
||||| | |||||||| || || || | ||| || | || | || | || ||
Sbjct 44959332 CTTCATTAGAGCGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTC 44959391
Query 11548 CTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACT---TCCTTAGATGGTGG 11604
|| |||||| | ||| |||| || ||||| | | ||| |||| |||| |
Sbjct 44959392 CTGTTCTATCTGAACAGCATTGATAATTATTTC---TCTCACTCTCTCCTCCGATGTTTT 44959448
Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664
|||| | ||||| ||||| || || ||||||||||| |||||||| || ||||| ||
Sbjct 44959449 GTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 44959508
Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724
|| |||||||| ||||| || | || |||||| ||||||||| || | ||| |||||
Sbjct 44959509 AATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATAT 44959568
Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784
| ||||| ||||| |||||||| | || || || || || || ||||| || | |||
Sbjct 44959569 CGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTACTGCAGCGAAGGCTACAACACGTTC 44959628
Query 11785 TCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841
||||| || ||| ||| ||||| ||||||||| || ||||| || ||
Sbjct 44959629 ACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGAC 44959688
Query 11842 GCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACA 11899
|| ||| ||||| || || || | |||||| | ||||| | |||| | |
Sbjct 44959689 ACAAGGCATCGTTTCAATGGCATTGAAGATAAATTC--CCTTTCTTTGGGATCTTTGATG 44959746
Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959
|| || || || | | |||||||||||| ||||| || |||||||| || ||||| ||
Sbjct 44959747 TAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAG 44959806
Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019
||||||||||| || || |||| | ||| || | ||||| ||| | |||||
Sbjct 44959807 CCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGACTAAATCGCTCCACCAAATTT 44959866
Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079
|||||||| || |||||||| | |||||| || | || | ||| |||||| | | |
Sbjct 44959867 TCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATCTCTC 44959926
Query 12080 TC----GTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTC 12135
|| | ||| || | ||||| | | || || || | || || |||||
Sbjct 44959927 TCCTCGGGCTTCAGGGA----TTCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCTTC 44959982
Query 12136 AACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195
|||||| || ||| | | | |||||||| | |||||||||||| |||| ||
Sbjct 44959983 CGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGAT 44960042
Query 12196 AGGGAAAATAACGAA 12210
||||| || || ||
Sbjct 44960043 GGGGAAGATGACAAA 44960057
Score = 131 bits (144), Expect = 2e-25
Identities = 323/489 (66%), Gaps = 42/489 (9%)
Strand=Plus/Minus
Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689
|| ||||| | ||| |||||||| || || || || || |||||||| |||||||| |
Sbjct 144142948 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144142889
Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749
|| ||||||| |||| |||| || | ||| ||||| ||||| ||||||||||||||
Sbjct 144142888 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144142829
Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803
| | ||||| ||||| ||| | || | |||||||| || | ||||| | |
Sbjct 144142828 GTACTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 144142769
Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863
||||| | ||||| | || ||||| || || || ||||||||| || ||
Sbjct 144142768 ---ATCCAACAGAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCA 144142713
Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921
|| | | |||| | ||||| | |||||| ||| |||||| || || | | | |||
Sbjct 144142712 TTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATATGTGTCAATAAGGAGATTAT 144142657
Query 11922 ACATTTCT--------------------------GAATGAATATTTTCCATAGCTATTTG 11955
|||||| ||||| || ||||| ||||| |||||
Sbjct 144142656 TTATTTCTCCTTATTGAATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTG 144142597
Query 11956 AAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAA 12015
||||||||||| || | |||| | ||| || || | |||| |||| | ||
Sbjct 144142596 GAATCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAA 144142537
Query 12016 ATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTA 12075
|| |||| || || ||||||| | |||||| || || || ||||| |||||| |
Sbjct 144142536 GTTTTCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATG 144142477
Query 12076 TTTTTCGTC 12084
| |||| ||
Sbjct 144142476 TCTTTCCTC 144142468
>seq5641
Length=113028656
Score = 116 bits (128), Expect = 3e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || ||||||||||||||||| | || ||||||| ||||||||| ||
Sbjct 102562832 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 102562891
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| ||||| |||||||| || || ||||| || ||||| |||
Sbjct 102562892 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 102562951
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||| ||
Sbjct 102562952 ACAACACGTTCACC 102562965
>seq25851
Length=153482349
Score = 111 bits (122), Expect = 1e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || |
Sbjct 108797160 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 108797219
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| | ||| || ||||| ||||| |
Sbjct 108797220 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 108797279
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||| ||
Sbjct 108797280 CCACCACTCTTTCCCC 108797295
>seq36523
Length=132107971
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| || ||||| || || |||||||||
Sbjct 66612661 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66612720
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || || |||||||| || || || || |
Sbjct 66612721 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 66612780
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 66612781 CTGTTTCTTATACCAT 66612796
>seq1
Length=229942017
Score = 93.3 bits (102), Expect = 4e-14
Identities = 219/324 (68%), Gaps = 14/324 (4%)
Strand=Plus/Minus
Query 11740 AGAA-AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCT 11795
|||| ||||| || || ||||| || ||||| ||||| || | ||| ||||| || |||
Sbjct 89927029 AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCT 89926970
Query 11796 TGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTT 11855
||| || || | |||||||| || ||||| || || |||||
Sbjct 89926969 CTTTGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCTTG---ACACAAGG---TGTTT 89926916
Query 11856 CTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTATTAA 11913
| || | ||| || | | ||| ||||| | |||| ||| || || || || |
Sbjct 89926915 CAATGGTGTTGAAGAGAA--ATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAG 89926858
Query 11914 TAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCG 11973
| |||||||||||| ||||| | |||||||| || ||||| || |||||||||| |
Sbjct 89926857 GAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTG 89926798
Query 11974 TGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACC 12033
|| |||| | ||| || || ||||| ||| | || || |||||||| || ||
Sbjct 89926797 GGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCC 89926738
Query 12034 ATCACTAGATGCAAAAAATGCTAG 12057
|||||| | |||||| || || ||
Sbjct 89926737 ATCACTTGCTGCAAAGAAAGCCAG 89926714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468164416580400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |