Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq51122 365 6e-96 seq37270 170 3e-37 seq1 152 7e-32 seq36523 107 3e-18 seq5641 104 3e-17 >seq51122 Length=156195299 Score = 365 bits (404), Expect = 6e-96 Identities = 646/938 (69%), Gaps = 19/938 (2%) Strand=Plus/Plus Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 35867 |||| || ||| |||||| | |||| ||| ||| | || |||| |||||||| Sbjct 44959129 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 44959188 Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 | || || || || || | | || || || ||||| || | | ||| ||||| | Sbjct 44959189 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44959243 Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987 |||| || || ||||| | || ||| || |||| |||| ||| || | Sbjct 44959244 CCATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44959303 Query 35988 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 36047 ||| ||||| ||||| || || ||| ||||| | | |||||||| || || || | Sbjct 44959304 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCT 44959363 Query 36048 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 36107 | || || | ||| | || || ||||| ||||| || || || | | || || Sbjct 44959364 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTT 44959423 Query 36108 ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 36167 | | ||| | || || | | | | | ||||| |||||||| || || |||| Sbjct 44959424 CTCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44959483 Query 36168 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 36227 | ||||||| |||||| ||||| ||||| | ||| |||||||||||||| || ||||| Sbjct 44959484 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44959543 Query 36228 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 36287 | || || || || ||||| ||||| || ||||| || || |||||||| | ||||||| Sbjct 44959544 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTA 44959603 Query 36288 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTT 36344 |||| || ||||| | || | || ||||| | | | |||| ||||| Sbjct 44959604 CTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44959663 Query 36345 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 36404 |||||||| |||||||| || ||||||||||| || || || ||||| |||| | | | Sbjct 44959664 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGATAAATT 44959723 Query 36405 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 36464 |||| || |||||| | || || ||||| | |||||||||||||| ||||| | Sbjct 44959724 CCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44959783 Query 36465 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 36524 ||||||| ||||| ||||| || || |||||||| | || || |||||||| ||| | Sbjct 44959784 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44959843 Query 36525 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 36584 || |||||| || | ||||||||||| ||||| || ||||| |||||||| || ||| Sbjct 44959844 GACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44959903 Query 36585 ATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG----ATA 36640 ||||| |||||||| | | || | || | || ||||| || || || Sbjct 44959904 GAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGCCGAATG 44959959 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 || || || | ||||| |||||| ||||| || || ||||| ||||| |||||||| Sbjct 44959960 TCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 44960019 Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 | |||||| ||||| || | || || || || ||||| Sbjct 44960020 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44960057 Score = 178 bits (196), Expect = 2e-39 Identities = 384/576 (67%), Gaps = 34/576 (6%) Strand=Plus/Minus Query 36170 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 36229 ||||||| |||||| || || ||||| | ||| |||||||| ||||| || ||||| || Sbjct 144142936 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144142877 Query 36230 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 36289 || | || || ||||| ||||| | ||||| || ||||||||||| | | ||| ||| Sbjct 144142876 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTACTTTCCACT 144142817 Query 36290 GCCGCAAAGGCAATAAGTCTCTCTCCAT---AACCGGCACTGTCATGTATCC-ACTTTTG 36345 |||||||| || | ||||||| | || | ||| |||| || | Sbjct 144142816 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACAGAAG 144142757 Query 36346 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 36405 | ||||| | |||||||| || |||| ||||||||| || || ||||| |||||| | | Sbjct 144142756 A-CCCAACCTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTC 144142699 Query 36406 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC--------- 36456 |||| || |||||||| |||||| ||||| | ||| ||| ||||| Sbjct 144142698 CCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCTCCTTATTG 144142641 Query 36457 -----------------CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 ||||| |||||||| || || ||||| ||||| ||||| || Sbjct 144142640 AATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGGAATCCATAGAAGCAG 144142581 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 36559 | || |||||||| |||||| | |||| |||| | || ||||||| | ||| Sbjct 144142580 AAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATC 144142521 Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619 || |||| |||||||| || |||| | ||| |||||||| | |||| | || | Sbjct 144142520 CCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATGTCTTTCCTCAGGCTTC 144142461 Query 36620 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 || | ||| | || || || || | ||||| || | | |||| || || Sbjct 144142460 AGGGCTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAA 144142401 Query 36680 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 ||||| | || ||||||| ||||| || |||||| Sbjct 144142400 ACCTCTACTTTCCTATACATTTTCCAAATATCATGA 144142365 >seq37270 Length=136387465 Score = 170 bits (188), Expect = 3e-37 Identities = 167/215 (78%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 9218 TTTTAAACTTTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATT 9277 |||||| ||| || |||||| | |||||| || | ||||||| |||| ||||||||| Sbjct 66237087 TTTTAA---TTACTTTTTATTAACTGCTTCCAGAAACCGTAACAGGTGCAGGAACAGATT 66237143 Query 9278 GATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATG 9337 ||||||||||||||||| |||| | ||||| || || |||||||| || || ||||| Sbjct 66237144 GATGATATCCAAGTAGAGGCTGATGGCAGCTAATACGTACTCTTCAGGTGACAGTTTATG 66237203 Query 9338 TATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGA 9397 || |||||||| ||||||||||| |||||||| ||||| | |||||| || ||| | Sbjct 66237204 CATCAGTGAGTGTGTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCTGCAGCGGC 66237263 Query 9398 CAGGACCAGCTCCACTGTTTCACTTTGCACAAATA 9432 | ||||| ||||| | | ||||| | | ||||| Sbjct 66237264 TAAGACCAACTCCATTATCTCACTATAAAAAAATA 66237298 Score = 125 bits (138), Expect = 9e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||| ||||| |||||||||||||| ||||| | ||| | Sbjct 66244958 CCTGCTCCAAATTTGCTGAAATCCCTCTTAGATTGTAGAGTATACATAGTCAAACCAAAA 66245017 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||| ||| ||||| ||||||||||||| || | || ||||||||||||||||| Sbjct 66245018 AATACTGTAGTCGTCAGTATGAAAGCTTGCAGAATAATATATACATCATAGAAAGTAAC 66245076 Score = 89.7 bits (98), Expect = 7e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||| Sbjct 66269505 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCTGCTGCCATAGTTGAAGTCGTCCTCGA 66269564 Query 9907 TGGAGGAGC 9915 | ||||||| Sbjct 66269565 TCGAGGAGC 66269573 >seq1 Length=229942017 Score = 152 bits (168), Expect = 7e-32 Identities = 239/339 (71%), Gaps = 10/339 (3%) Strand=Plus/Minus Query 36268 AGAA-AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGG 36323 |||| ||||| || ||||| ||||| |||||||| | || | || ||||| | | Sbjct 89927029 AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCT 89926970 Query 36324 CACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 36383 | |||| || || | ||||||| |||||||| |||||||| ||| | Sbjct 89926969 CTTTGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCTTG---ACACAAGG---TGTTT 89926916 Query 36384 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 36443 | || | || |||||| | | |||| || |||||| | || || ||||| | | Sbjct 89926915 CAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGA 89926856 Query 36444 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 36503 ||||||||||||| ||||| ||||||| ||||| ||||| || | |||||||| | Sbjct 89926855 GACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGG 89926796 Query 36504 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 36563 | || |||||||| |||||| | |||||| || | || |||||||| ||||| || | Sbjct 89926795 CTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCCAT 89926736 Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 36602 |||| |||||||| || |||| ||| | |||||||| Sbjct 89926735 CACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 89926697 >seq36523 Length=132107971 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 66612661 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66612720 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 66612721 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 66612780 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 66612781 CTGTTTCTTATACCATA 66612797 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 66609841 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 66609900 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 66609901 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 66609960 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 66609961 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 66610011 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| |||||||||||||| | || | |||||||| | Sbjct 66623538 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 66623597 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 66623598 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 66623657 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 66623658 AGGCTCCAGGTAAATAGC 66623675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 66640842 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGA 66640901 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 66640902 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 66640961 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 66640962 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 66641007 >seq5641 Length=113028656 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 102565223 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 102565282 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 102565283 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 102565342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657666541709400