Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq46691 138 1e-27 seq47930 118 9e-22 seq10472 111 1e-19 >seq46691 Length=94050890 Score = 138 bits (152), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| ||||| || |||||||||||||||||||| || | Sbjct 32059106 TCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 32059165 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | || |||||||||||||||||||||||||| | Sbjct 32059166 GCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 32059225 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 32059226 CCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 32059269 >seq47930 Length=60714840 Score = 118 bits (130), Expect = 9e-22 Identities = 135/180 (75%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 |||||| | | || ||||| || || | ||||| || || | ||| |||||| ||| Sbjct 36491759 GTAAACATACACATCTCCCAAAGTATGTGCGAAGTCACCAGGCTTTAGGTCCGTGATGTG 36491818 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 | ||||| ||| || || ||||||||||||| |||||| || || | || |||||| | Sbjct 36491819 TGTGATCACATAAGTGAGCAGGGCGTAGCTGGTGATGTTGAA-GGTGCACCCAGGCCCCT 36491877 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124 ||| | |||||||||| |||||||||||||||||| || ||||| | ||||| || Sbjct 36491878 GTCTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACCACGAAGAACTGGCA 36491937 >seq10472 Length=202140232 Score = 111 bits (122), Expect = 1e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || | |||| || ||||| || ||||| || || ||||| | | Sbjct 39119811 TTTAAGGCATCATCCAAACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGT 39119752 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || | ||||||||| | | | ||| || ||||| ||||| ||||| Sbjct 39119751 TCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 39119692 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | |||||||| |||| ||||| || ||| | || || | || | Sbjct 39119691 AACCAGGTCTTCCGACCCATAATCACCAGATTCTGTTTACCCTCTACTGAAGAAGTTGTG 39119632 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||| |||| |||||| | | ||| || || || |||||| |||| ||||| Sbjct 39119631 GTCATTCTCTGGAAATACCTGAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCCCCGTTC 39119572 Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243 || || || || | | || || || ||||||||||| Sbjct 39119571 TTGCCGATGCCCATGTTTTGGGACACAGCGACGATGCAGTT 39119531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427455186046800